Schema for xenoMrna
  Database: rn5    Primary Table: xenoMrna    Row Count: 4,644,538   Data last updated: 2020-08-20
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 73smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 644int(10) unsigned Number of bases that match that aren't repeats
misMatches 86int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 11int(10) unsigned Number of inserts in query
qBaseInsert 177int(10) unsigned Number of bases inserted in query
tNumInsert 16int(10) unsigned Number of inserts in target
tBaseInsert 462121int(10) unsigned Number of bases inserted in target
strand +-char(2) + or - for strand. First character query, second target (optional)
qName AK134731varchar(255) Query sequence name
qSize 1332int(10) unsigned Query sequence size
qStart 83int(10) unsigned Alignment start position in query
qEnd 990int(10) unsigned Alignment end position in query
tName chr1varchar(255) Target sequence name
tSize 290094216int(10) unsigned Target sequence size
tStart 30643int(10) unsigned Alignment start position in target
tEnd 493494int(10) unsigned Alignment end position in target
blockCount 18int(10) unsigned Number of blocks in alignment
blockSizes 24,13,3,30,39,42,32,119,24,...longblob Size of each block
qStarts 83,107,120,123,187,275,319,...longblob Start of each block in query.
tStarts 289600722,289600752,2896007...longblob Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoMrna.qName)
      hgFixed.gbMiscDiff.acc (via xenoMrna.qName)
      hgFixed.gbSeq.acc (via xenoMrna.qName)
      hgFixed.gbWarn.acc (via xenoMrna.qName)
      hgFixed.imageClone.acc (via xenoMrna.qName)
      rn5.all_est.qName (via xenoMrna.qName)
      rn5.all_mrna.qName (via xenoMrna.qName)
      rn5.refGene.name (via xenoMrna.qName)
      rn5.refSeqAli.qName (via xenoMrna.qName)
      rn5.xenoRefFlat.name (via xenoMrna.qName)
      rn5.xenoRefGene.name (via xenoMrna.qName)
      rn5.xenoRefSeqAli.qName (via xenoMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
7364486001117716462121+-AK134731133283990chr1290094216306434934941824,13,3,30,39,42,32,119,24,35,17,21,9,18,17,41,108,138,83,107,120,123,187,275,319,351,494,522,558,583,607,622,665,703,744,852,289600722,289600752,289600780,289600784,289600845,289600924,289600967,289607651,289607790,289607819,289607858,289607882,28960790 ...
73992185001112214492775+-AK0508551321211320chr1290094216450275389791983,59,101,18,12,4,15,5,34,129,53,44,56,50,57,65,52,146,194,21,104,203,324,349,362,367,382,387,421,550,603,669,727,785,843,910,962,1126,289555237,289830794,289830881,289831007,289831031,289831053,289831057,289831120,289922608,289922643,289987075,289987571,28998762 ...
7317622690023137222424674++AK05311638871533556chr12900942166952949623429105,26,183,33,213,145,96,98,19,184,90,47,15,45,26,21,42,85,11,15,13,82,24,179,49,8,12,111,54,153,304,332,515,556,770,917,1570,1678,1906,2091,2214,2283,2509,2564,2590,2612,2654,2739,2765,2781,2794,3017,3101,3291,3342,3357, ...69529,69675,69701,69917,69952,70165,70311,215346,215473,215492,215676,215809,215865,215883,215937,215966,215987,216030,495414,49 ...
7352768007163764889+-AK05179387491849chr1290094216105990171474960,87,57,63,48,40,90,111,39,91,273,369,429,494,547,588,699,810,289922742,289923703,289987753,289987812,289987875,289987924,289987968,289988075,289988187,
73106180011892310295+-JI88761247871384chr1290094216200922511341360,46,18,71,320,366,289582875,289845025,289893276,
5865220000000+-LE675825205132204chr1290094216203573203645172,132,289890571,
7316432300024145122283837++AK05311638871523476chr129009421621411149982129111,213,25,300,58,98,80,15,4,24,21,82,111,22,6,43,11,45,26,22,42,87,13,93,162,45,8,12,94,152,302,515,556,856,915,1570,1677,1693,1932,1956,1978,2070,2186,2210,2218,2283,2509,2564,2590,2613,2663,2765,2783,3116,3293,3342 ...214111,214252,214498,214533,289577,289635,290089,290215,290230,290261,494849,494870,494955,495084,495106,495113,498828,498846,49 ...
5878025000000+-LE12782031976181chr12900942163236493237541105,76,289770462,
588175680013151315++LE411570919361919chr12900942164004444010022120,123,361,796,400444,400879,
589105515600111550182724+-AK1454943775742835chr12900942165313125352472037,87,19,82,4,190,55,48,30,77,129,25,49,61,15,15,105,69,30,84,74,111,336,404,486,490,715,771,819,1309,1386,1515,1585,1635,1696,1723,1747,1852,1946,2751,289558969,289559059,289559276,289559343,289559438,289559755,289559974,289560029,289560078,289560576,289560830,289561078,28956114 ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.