Schema for intronEst
  Database: rn6    Primary Table: intronEst    Row Count: 472,895   Data last updated: 2016-07-05
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 598smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 393int(10) unsigned range Number of bases that match that aren't repeats
misMatches 3int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 1int(10) unsigned range Number of inserts in query
qBaseInsert 18int(10) unsigned range Number of bases inserted in query
tNumInsert 2int(10) unsigned range Number of inserts in target
tBaseInsert 4308int(10) unsigned range Number of bases inserted in target
strand +char(2) values + or - for strand. First character query, second target (optional)
qName AA925247varchar(255) values Query sequence name
qSize 428int(10) unsigned range Query sequence size
qStart 14int(10) unsigned range Alignment start position in query
qEnd 428int(10) unsigned range Alignment end position in query
tName chr1varchar(255) values Target sequence name
tSize 282763074int(10) unsigned range Target sequence size
tStart 1736151int(10) unsigned range Alignment start position in target
tEnd 1740855int(10) unsigned range Alignment end position in target
blockCount 3int(10) unsigned range Number of blocks in alignment
blockSizes 99,168,129,longblob   Size of each block
qStarts 14,131,299,longblob   Start of each block in query.
tStarts 1736151,1736275,1740726,longblob   Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via intronEst.qName)
      hgFixed.gbSeq.acc (via intronEst.qName)
      hgFixed.imageClone.acc (via intronEst.qName)
      rn6.all_est.qName (via intronEst.qName)
      rn6.estOrientInfo.name (via intronEst.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
59839330011824308+AA92524742814428chr128276307417361511740855399,168,129,14,131,299,1736151,1736275,1740726,
59848420100524005-AA9433924870487chr128276307417432451767737622,83,105,32,105,140,0,22,105,210,242,347,1743245,1743268,1746298,1749365,1750790,1767597,
59847538000624006-AA9433914860486chr128276307417432811767773770,105,32,105,141,8,25,0,70,175,207,312,453,461,1743281,1746298,1749365,1750790,1767597,1767739,1767748,
598367015000421058-AA9004103820382chr128276307417463401767780563,32,105,141,41,0,63,95,200,341,1746340,1749365,1750790,1767597,1767739,
5985241000045078+AA95613953813538chr128276307417722551777858563,78,181,136,67,13,76,154,335,471,1772255,1773278,1774162,1776350,1777791,
640527200001193+AA8910425420529chr1282763074732304173237632397,132,0,397,7323041,7323631,
640519301003806-AA8014135230523chr1282763074732318173245104257,201,53,12,0,257,458,511,7323181,7323631,7324161,7324498,
64349330000313369+AA96430751115511chr1282763074768581876996834207,97,123,69,15,222,319,442,7685818,7688757,7698479,7699614,
6444820021116291+AA92411251816501chr1282763074781717778239523187,132,165,16,204,336,7817177,7817364,7823787,
6526315000028683+AA9440166360636chr1282763074883040988397283498,87,51,0,498,585,8830409,8834781,8839677,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.