Schema for mrnaOrientInfo
  Database: rn6    Primary Table: mrnaOrientInfo    Row Count: 287,520   Data last updated: 2020-08-20
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 38432int(10) unsigned range Start position in chromosome
chromEnd 38458int(10) unsigned range End position in chromosome
name DQ750836varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)
      rn6.all_mrna.qName (via mrnaOrientInfo.name)
      rn6.mgcFullMrna.qName (via mrnaOrientInfo.name)
      rn6.mgcGenes.name (via mrnaOrientInfo.name)
      rn6.refFlat.name (via mrnaOrientInfo.name)
      rn6.refGene.name (via mrnaOrientInfo.name)
      rn6.refSeqAli.qName (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585chr13843238458DQ75083600000
585chr13983039859DQ61625200000
585chr13999140020DQ60372400000
585chr14011940149DQ75383200000
585chr14231542340DQ75060200000
585chr14236442390DQ74087100000
585chr14249842522DQ72872700000
585chr14256642592DQ74357800000
585chr14752347550DQ75440000000
585chr14754047570DQ74224900000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.