Schema for xenoMrna
  Database: rn6    Primary Table: xenoMrna    Row Count: 4,850,122   Data last updated: 2020-08-20
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 239int(10) unsigned Number of bases that match that aren't repeats
misMatches 42int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 4int(10) unsigned Number of inserts in query
qBaseInsert 62int(10) unsigned Number of bases inserted in query
tNumInsert 5int(10) unsigned Number of inserts in target
tBaseInsert 60970int(10) unsigned Number of bases inserted in target
strand +-char(2) + or - for strand. First character query, second target (optional)
qName AK154701varchar(255) Query sequence name
qSize 915int(10) unsigned Query sequence size
qStart 494int(10) unsigned Alignment start position in query
qEnd 837int(10) unsigned Alignment end position in query
tName chr1varchar(255) Target sequence name
tSize 282763074int(10) unsigned Target sequence size
tStart 48431int(10) unsigned Alignment start position in target
tEnd 109682int(10) unsigned Alignment end position in target
blockCount 7int(10) unsigned Number of blocks in alignment
blockSizes 65,30,6,11,44,68,57,longblob Size of each block
qStarts 494,561,591,597,615,663,780,longblob Start of each block in query.
tStarts 282653392,282653457,2826896...longblob Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoMrna.qName)
      hgFixed.gbMiscDiff.acc (via xenoMrna.qName)
      hgFixed.gbSeq.acc (via xenoMrna.qName)
      hgFixed.gbWarn.acc (via xenoMrna.qName)
      hgFixed.imageClone.acc (via xenoMrna.qName)
      rn6.all_est.qName (via xenoMrna.qName)
      rn6.all_mrna.qName (via xenoMrna.qName)
      rn6.refGene.name (via xenoMrna.qName)
      rn6.refSeqAli.qName (via xenoMrna.qName)
      rn6.xenoRefFlat.name (via xenoMrna.qName)
      rn6.xenoRefGene.name (via xenoMrna.qName)
      rn6.xenoRefSeqAli.qName (via xenoMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
5852394200462560970+-AK154701915494837chr128276307448431109682765,30,6,11,44,68,57,494,561,591,597,615,663,780,282653392,282653457,282689627,282714416,282714438,282714489,282714586,
5852124400110260888++AK00310359016282chr1282763074493481104923128,89,39,16,144,243,49348,110349,110453,
7320223140024106822429703++AK05311638871523556chr12827630747280450484331106,183,23,213,144,98,48,174,51,98,19,184,90,47,15,45,26,21,42,85,11,15,13,82,90,179,49,8,12,111,54,152,332,515,556,770,915,1095,1344,1518,1570,1678,1906,2091,2214,2283,2509,2564,2590,2612,2654,2739,2765,2781,2794,3010,3101,3291 ...72804,72977,73193,73228,73441,73585,73765,73813,73988,219396,219523,219542,219726,219859,219915,219933,219987,220016,220037,2200 ...
73954172001615713437178+-AK0508551321371320chr12827630741092265475302067,59,101,18,12,4,16,29,149,40,6,9,51,2,49,58,65,92,105,194,37,104,203,324,349,362,367,392,421,603,647,654,674,726,728,784,843,910,1003,1126,282215544,282492872,282492959,282493085,282493109,282493131,282493135,282493159,282493189,282493417,282493458,282493468,28249347 ...
7356082006116564842+-AK05179387491849chr1282763074109266174750961,128,57,65,45,45,91,111,39,91,233,369,427,494,543,588,699,810,282588324,282589245,282653335,282653392,282653457,282653502,282653550,282653657,282653769,
5875322000000++LA77587317579154chr1282763074354022354097175,79,354022,
73227960023402300975++LE411570919256919chr1282763074406620707918377,117,129,256,364,790,406620,707363,707789,
5887938000012263++JV202560416218335chr1282763074406680409060292,25,218,310,406680,409035,
588139590011551155++JN80573441150403chr1282763074409119409472221,177,50,226,409119,409295,
589100315000111608162782+-AK1454943775742835chr12827630745398795438141937,87,19,82,4,190,51,48,30,158,50,62,15,15,105,65,18,33,84,74,111,336,404,486,490,719,771,819,1308,1584,1634,1696,1723,1747,1852,1918,1945,2751,282219260,282219350,282219567,282219634,282219729,282220046,282220269,282220320,282220369,282220866,282221430,282221493,28222155 ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.