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Database: rn7 Primary Table: all_est Row Count: 1,172,801 Data last updated: 2021-03-24
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
| field | example | SQL type | description |
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| bin | 594 | smallint(5) unsigned | Indexing field to speed chromosome range queries. |
| matches | 327 | int(10) unsigned | Number of bases that match that aren't repeats |
| misMatches | 0 | int(10) unsigned | Number of bases that don't match |
| repMatches | 0 | int(10) unsigned | Number of bases that match but are part of repeats |
| nCount | 1 | int(10) unsigned | Number of 'N' bases |
| qNumInsert | 0 | int(10) unsigned | Number of inserts in query |
| qBaseInsert | 0 | int(10) unsigned | Number of bases inserted in query |
| tNumInsert | 0 | int(10) unsigned | Number of inserts in target |
| tBaseInsert | 0 | int(10) unsigned | Number of bases inserted in target |
| strand | + | char(2) | + or - for strand. First character query, second target (optional) |
| qName | AA686370 | varchar(255) | Query sequence name |
| qSize | 338 | int(10) unsigned | Query sequence size |
| qStart | 0 | int(10) unsigned | Alignment start position in query |
| qEnd | 328 | int(10) unsigned | Alignment end position in query |
| tName | chr1 | varchar(255) | Target sequence name |
| tSize | 260522016 | int(10) unsigned | Target sequence size |
| tStart | 1294731 | int(10) unsigned | Alignment start position in target |
| tEnd | 1295059 | int(10) unsigned | Alignment end position in target |
| blockCount | 1 | int(10) unsigned | Number of blocks in alignment |
| blockSizes | 328, | longblob | Size of each block |
| qStarts | 0, | longblob | Start of each block in query. |
| tStarts | 1294731, | longblob | Start of each block in target. |
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Connected Tables and Joining Fields
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Sample Rows
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| bin | matches | misMatches | repMatches | nCount | qNumInsert | qBaseInsert | tNumInsert | tBaseInsert | strand | qName | qSize | qStart | qEnd | tName | tSize | tStart | tEnd | blockCount | blockSizes | qStarts | tStarts |
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| 594 | 327 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | + | AA686370 | 338 | 0 | 328 | chr1 | 260522016 | 1294731 | 1295059 | 1 | 328, | 0, | 1294731, |
| 595 | 385 | 5 | 0 | 0 | 1 | 1 | 2 | 2 | + | AA964125 | 391 | 0 | 391 | chr1 | 260522016 | 1383026 | 1383418 | 4 | 134,71,163,22, | 0,134,205,369, | 1383026,1383161,1383233,1383396, |
| 597 | 387 | 3 | 0 | 0 | 1 | 1 | 0 | 0 | - | AA964125 | 391 | 0 | 391 | chr1 | 260522016 | 1591100 | 1591490 | 2 | 24,366, | 0,25, | 1591100,1591124, |
| 599 | 384 | 6 | 0 | 0 | 1 | 1 | 1 | 1 | + | AA964125 | 391 | 0 | 391 | chr1 | 260522016 | 1949687 | 1950078 | 3 | 134,234,22, | 0,134,369, | 1949687,1949822,1950056, |
| 600 | 494 | 0 | 0 | 0 | 0 | 0 | 1 | 440 | + | AA874926 | 494 | 0 | 494 | chr1 | 260522016 | 2060032 | 2060966 | 2 | 9,485, | 0,9, | 2060032,2060481, |
| 600 | 376 | 1 | 0 | 0 | 0 | 0 | 1 | 2 | - | AA859893 | 387 | 0 | 377 | chr1 | 260522016 | 2060048 | 2060427 | 2 | 371,6, | 10,381, | 2060048,2060421, |
| 600 | 333 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | - | AA850307 | 334 | 0 | 334 | chr1 | 260522016 | 2060074 | 2060408 | 1 | 334, | 0, | 2060074, |
| 600 | 334 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | - | AA851694 | 337 | 0 | 337 | chr1 | 260522016 | 2061293 | 2061630 | 1 | 337, | 0, | 2061293, |
| 601 | 387 | 1 | 0 | 1 | 5 | 5 | 0 | 0 | + | AA686047 | 394 | 0 | 394 | chr1 | 260522016 | 2107311 | 2107700 | 6 | 303,42,10,25,4,5, | 0,304,347,358,384,389, | 2107311,2107614,2107656,2107666,2107691,2107695, |
| 601 | 336 | 0 | 0 | 0 | 0 | 0 | 1 | 69 | + | AA685477 | 341 | 5 | 341 | chr1 | 260522016 | 2107407 | 2107812 | 2 | 331,5, | 5,336, | 2107407,2107807, |
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Note: all start coordinates in our database are 0-based, not
1-based. See explanation
here.
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US Server