Schema for ensGene
  Database: sarHar1    Primary Table: ensGene    Row Count: 24,035   Data last updated: 2020-08-31
Format description: A gene prediction with some additional info.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 586smallint(5) unsigned range Indexing field to speed chromosome range queries.
name ENSSHAT00000006743.1varchar(255) values Name of gene (usually transcript_id from GTF)
chrom chr1_GL834412_randomvarchar(255) values Reference sequence chromosome or scaffold
strand +char(1) values + or - for strand
txStart 183602int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 198879int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 183602int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 198622int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 9int(10) unsigned range Number of exons
exonStarts 183602,184755,189294,189883...longblob   Exon start positions (or end positions for minus strand item)
exonEnds 183680,184957,189467,189945...longblob   Exon end positions (or start positions for minus strand item)
score 0int(11) range score
name2 ENSSHAG00000005817.1varchar(255) values Alternate name (e.g. gene_id from GTF)
cdsStartStat incmplenum('none', 'unk', 'incmpl', 'cmpl') values Status of CDS start annotation (none, unknown, incomplete, or complete)
cdsEndStat cmplenum('none', 'unk', 'incmpl', 'cmpl') values Status of CDS end annotation (none, unknown, incomplete, or complete)
exonFrames 0,0,1,0,2,0,2,0,0,longblob   Reading frame of the start of the CDS region of the exon, in the direction of transcription (0,1,2), or -1 if there is no CDS region.

Connected Tables and Joining Fields
        knownGeneV39.knownToEnsembl.value (via ensGene.name)
      sarHar1.ensGtp.transcript (via ensGene.name)
      sarHar1.ensPep.name (via ensGene.name)
      sarHar1.ensemblSource.name (via ensGene.name)
      sarHar1.ensemblToGeneName.name (via ensGene.name)

Sample Rows
 
binnamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEndsscorename2cdsStartStatcdsEndStatexonFrames
586ENSSHAT00000006743.1chr1_GL834412_random+1836021988791836021986229183602,184755,189294,189883,191911,193137,195217,195353,198571,183680,184957,189467,189945,191969,193190,195257,195446,198879,0ENSSHAG00000005817.1incmplcmpl0,0,1,0,2,0,2,0,0,
589ENSSHAT00000023646.1chr1_GL834412_random+5242985243955243955243951524298,524395,0ENSSHAG00000020030.1nonenone-1,
587ENSSHAT00000008080.1chr1_GL834413_random+2719242733712719242733712271924,272826,272021,273371,0ENSSHAG00000006952.1incmplcmpl0,1,
585ENSSHAT00000001832.1chr1_GL834414_random-140824050714082405072314082,14321,16240,16896,16968,17706,18670,19456,20428,20630,23752,24369,25545,26241,26621,27479,29448,30469,37053,38390,39017,40 ...14125,14326,16860,16944,17637,18622,19014,19520,20501,21703,24345,24633,25689,26413,26740,27783,29633,30955,37626,38433,39090,40 ...0ENSSHAG00000001614.1cmplincmpl2,0,1,1,1,0,1,0,2,0,1,1,1,0,1,0,1,1,1,0,2,0,0,
593ENSSHAT00000014872.1chr1_GL834414_random+106200910623061062009106230611062009,1062306,0ENSSHAG00000012591.1cmplincmpl0,
585ENSSHAT00000002954.1chr1_GL834415_random-36308369773630836977136308,36977,0ENSSHAG00000002586.1cmplcmpl0,
585ENSSHAT00000004742.1chr1_GL834415_random+89537928038953792803289537,92533,89630,92803,0ENSSHAG00000004121.1cmplcmpl0,0,
73ENSSHAT00000005681.1chr1_GL834416_random+12887024829812887024713739128870,134457,138284,142514,151908,153690,157509,160713,161122,163589,165874,167346,172044,174593,177261,194130,195004,196837,20 ...128897,134493,138311,142565,151944,153717,157536,160740,161149,163616,165931,167412,172161,174620,177297,194175,195037,196864,20 ...0ENSSHAG00000004917.1incmplcmpl0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,
73ENSSHAT00000009242.1chr1_GL834416_random+3684474010503685094010508368447,383600,388297,390174,392523,395032,398105,400884,368681,383707,388495,390285,392623,395122,398280,401050,0ENSSHAG00000007934.1cmplcmpl0,1,0,0,0,1,1,2,
588ENSSHAT00000009672.1chr1_GL834416_random-4042974117214042974116435404297,404711,408582,409466,411604,404452,404912,408735,409575,411721,0ENSSHAG00000008296.1cmplcmpl1,1,1,0,0,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.