Schema for mrnaOrientInfo
  Database: speTri2    Primary Table: mrnaOrientInfo    Row Count: 86   Data last updated: 2020-08-20
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 79smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom JH393279varchar(255) values Reference sequence chromosome or scaffold
chromStart 7071846int(10) unsigned range Start position in chromosome
chromEnd 7094239int(10) unsigned range End position in chromosome
name GU434272varchar(255) values Accession of EST
intronOrientation 3smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)
      speTri2.all_mrna.qName (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
79JH39327970718467094239GU43427230000
696JH3932841457658114584362AF327854300200
764JH3932862350292223505664AF3958692370610
626JH39328754546115466979AY51834710000
594JH39328812905971294750AY37518210000
741JH3932882049418920498999AY56083631000
614JH39329338597883870348GU43427020000
727JH3932951870505718705494DQ50342300000
634JH39329664863936498481AF02729312260490
634JH39329664863936498481AF39587012330560

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.