Schema for xenoRefFlat
  Database: strPur1    Primary Table: xenoRefFlat    Row Count: 662,468   Data last updated: 2020-09-01
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type description
geneName MAVSvarchar(255) Name of gene as it appears in genome browser.
name NM_001385663varchar(255) Name of gene
chrom Scaffold77945varchar(255) Reference sequence chromosome or scaffold
strand +char(1) + or - for strand
txStart 143int(10) unsigned Transcription start position (or end position for minus strand item)
txEnd 435int(10) unsigned Transcription end position (or start position for minus strand item)
cdsStart 435int(10) unsigned Coding region start (or end position for minus strand item)
cdsEnd 435int(10) unsigned Coding region end (or start position for minus strand item)
exonCount 1int(10) unsigned Number of exons
exonStarts 143,longblob Exon start positions (or end positions for minus strand item)
exonEnds 435,longblob Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)
      strPur1.xenoRefGene.name (via xenoRefFlat.name)
      strPur1.xenoRefSeqAli.qName (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
MAVSNM_001385663Scaffold77945+1434354354351143,435,
SLC6A20NM_001385683Scaffold71479-5177907907903517,664,751,643,742,790,
ZNF439NM_001348720Scaffold70237-4365054212950549436,1050,1878,2035,2129,2183,2267,2517,4907,460,1074,1899,2068,2159,2237,2315,2528,5054,
Dnal1NM_001346528Scaffold1428+1549121595851555621595859154912,155505,156170,156426,157497,158145,158245,158819,159550,154948,155595,156222,156430,157549,158234,158249,158907,159585,
PPP4R1NM_005134Scaffold524+1634891679411634891679414163489,164192,166398,167779,163579,164261,166587,167941,
Zfp36NM_011756Scaffold820+15858160681585816068115858,16068,
Zfp35NM_011755Scaffold106607+65183208165183208176518,7025,8071,8242,13592,13845,32021,6578,7133,8149,8287,13622,13875,32081,
Zfp35NM_011755Scaffold106607+651836726651836726116518,8071,13643,13846,32021,32136,32391,32534,36092,36330,36681,6578,8130,13678,13902,32052,32307,32501,32712,36246,36475,36726,
Zfp35NM_011755Scaffold106607+807136256807136256138071,8224,8425,13615,13668,13846,32021,32189,32369,32534,32681,36082,36166,8131,8287,8447,13638,13678,13983,32081,32339,32420,32585,32753,36139,36256,
Zfp35NM_011755Scaffold115698-414453354144533554144,4291,4770,4867,5059,4267,4686,4783,5050,5335,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.