Schema for xenoMrna
  Database: susScr2    Primary Table: xenoMrna    Row Count: 7,170,066   Data last updated: 2020-09-01
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 75int(10) unsigned Number of bases that match that aren't repeats
misMatches 9int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 3int(10) unsigned Number of inserts in query
qBaseInsert 104int(10) unsigned Number of bases inserted in query
tNumInsert 3int(10) unsigned Number of inserts in target
tBaseInsert 2389int(10) unsigned Number of bases inserted in target
strand ++char(2) + or - for strand. First character query, second target (optional)
qName JU701988varchar(255) Query sequence name
qSize 366int(10) unsigned Query sequence size
qStart 170int(10) unsigned Alignment start position in query
qEnd 358int(10) unsigned Alignment end position in query
tName chr1varchar(255) Target sequence name
tSize 295529705int(10) unsigned Target sequence size
tStart 19432int(10) unsigned Alignment start position in target
tEnd 21905int(10) unsigned Alignment end position in target
blockCount 5int(10) unsigned Number of blocks in alignment
blockSizes 24,21,14,7,18,longblob Size of each block
qStarts 170,201,264,278,340,longblob Start of each block in query.
tStarts 19432,21437,21458,21478,21887,longblob Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoMrna.qName)
      hgFixed.gbMiscDiff.acc (via xenoMrna.qName)
      hgFixed.gbSeq.acc (via xenoMrna.qName)
      hgFixed.gbWarn.acc (via xenoMrna.qName)
      hgFixed.imageClone.acc (via xenoMrna.qName)
      susScr2.all_est.qName (via xenoMrna.qName)
      susScr2.all_mrna.qName (via xenoMrna.qName)
      susScr2.xenoRefFlat.name (via xenoMrna.qName)
      susScr2.xenoRefGene.name (via xenoMrna.qName)
      susScr2.xenoRefSeqAli.qName (via xenoMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
58575900310432389++JU701988366170358chr12955297051943221905524,21,14,7,18,170,201,264,278,340,19432,21437,21458,21478,21887,
58575900310432389++JU789989594398586chr12955297051943221905524,21,14,7,18,398,429,492,506,568,19432,21437,21458,21478,21887,
58570280000139++FX112613648523621chr12955297052054820685272,26,523,595,20548,20659,
585360490041005123+-JU3118317891510chr12955297052529125823736,165,22,8,111,10,57,1,120,299,323,332,443,453,295503882,295504027,295504203,295504226,295504234,295504346,295504357,
58511679000000+-JT103811898315510chr129552970567837680321195,315,295461673,
585712400003694+-JW279333106865160chr12955297057109671885430,19,7,39,65,95,114,121,295457820,295458206,295458529,295458570,
73843600002211114+-JW86700019899129chr129552970582670293904360,6,54,9,69,75,295235801,295236840,295446981,
73661800116128843++JV663624783536636chr1295529705120464149391245,39,536,597,120464,149352,
586791700221257348++JT26415120862179chr1295529705155421212865345,21,30,62,111,149,155421,156390,212835,
58676150000357355++JT099032541531183209chr1295529705155421212867423,30,5,33,3118,3141,3171,3176,155421,156380,158274,212834,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.