Schema for mrnaOrientInfo
  Database: susScr3    Primary Table: mrnaOrientInfo    Row Count: 54,527   Data last updated: 2020-09-01
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom GL892100-1varchar(255) values Reference sequence chromosome or scaffold
chromStart 0int(10) unsigned range Start position in chromosome
chromEnd 100int(10) unsigned range End position in chromosome
name AK232581varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 17smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)
      susScr3.all_mrna.qName (via mrnaOrientInfo.name)
      susScr3.refFlat.name (via mrnaOrientInfo.name)
      susScr3.refGene.name (via mrnaOrientInfo.name)
      susScr3.refSeqAli.qName (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585GL892100-10100AK232581017000
585GL892101-1097AK3461450190390
585GL892101-1097AK394277018000
585GL892101-1099AK232863017000
585GL892101-1099AK232989019100
585GL892101-1099AK393143018100
585GL892101-1099AK393199018000
585GL892101-1099AK394264014000
585GL892101-1099AK394366017000
585GL892101-1099AK400515016000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.