Schema for intronEst
  Database: taeGut1    Primary Table: intronEst (chr1_intronEst)    Row Count: 2,807   Data last updated: 2016-04-23
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 589smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 603int(10) unsigned range Number of bases that match that aren't repeats
misMatches 11int(10) unsigned range Number of bases that don't match
repMatches 100int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 4int(10) unsigned range Number of inserts in target
tBaseInsert 2706int(10) unsigned range Number of bases inserted in target
strand -char(2) values + or - for strand. First character query, second target (optional)
qName CK310811varchar(255) values Query sequence name
qSize 714int(10) unsigned range Query sequence size
qStart 0int(10) unsigned range Alignment start position in query
qEnd 714int(10) unsigned range Alignment end position in query
tName chr1varchar(255) values Target sequence name
tSize 118548696int(10) unsigned range Target sequence size
tStart 632048int(10) unsigned range Alignment start position in target
tEnd 635468int(10) unsigned range Alignment end position in target
blockCount 5int(10) unsigned range Number of blocks in alignment
blockSizes 75,81,82,175,301,longblob   Size of each block
qStarts 0,75,156,238,413,longblob   Start of each block in query.
tStarts 632048,633223,633557,634125...longblob   Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via intronEst.qName)
      hgFixed.gbSeq.acc (via intronEst.qName)
      hgFixed.imageClone.acc (via intronEst.qName)
      taeGut1.all_est.qName (via intronEst.qName)
      taeGut1.est.qName (via intronEst.qName)
      taeGut1.estOrientInfo.name (via intronEst.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
5896031110000042706-CK3108117140714chr1118548696632048635468575,81,82,175,301,0,75,156,238,413,632048,633223,633557,634125,635167,
589614712301152741-CK31708477631776chr11185486966351796386646372,45,89,38,96,104,0,373,418,507,545,641,635179,635606,636880,637199,638024,638560,
5903190000012704+CK3098095940319chr1118548696736056739079262,257,0,62,736056,738822,
5934802151036141293+CK30319573928722chr1118548696109714310990698164,121,35,32,50,39,90,102,28,192,313,402,435,491,530,620,1097143,1097768,1097981,1098016,1098048,1098098,1098343,1098967,
600470761021942124-CK3150415570557chr111854869620781362080798512,124,143,137,122,0,19,155,298,435,2078136,2078154,2078286,2079520,2080676,
756912100012357690+CK30270781722817chr111854869623229972381480435,54,612,92,22,59,113,725,2322997,2340928,2380775,2381388,
756712121012139793+CK31152883337833chr111854869623409282381515354,612,128,37,91,705,2340928,2380775,2381387,
75594178300139793+CK3162906760676chr111854869623409422381411240,636,0,40,2340942,2380775,
6047441382000527098-CK31322182623826chr1118548696249373325216346129,99,168,118,154,135,0,129,228,396,514,668,2493733,2494418,2497327,2498308,2506919,2521499,
616708104100013222+CK3049987590759chr111854869641072444111225268,691,0,68,4107244,4110534,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.