Schema for mrnaOrientInfo
  Database: taeGut2    Primary Table: mrnaOrientInfo    Row Count: 6,403   Data last updated: 2020-08-20
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 601smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 2132707int(10) unsigned range Start position in chromosome
chromEnd 2136835int(10) unsigned range End position in chromosome
name DQ214360varchar(255) values Accession of EST
intronOrientation 3smallint(6) range Orientation of introns with respect to EST
sizePolyA 16smallint(6) range Number of trailing A's
revSizePolyA 1smallint(6) range Number of trailing A's on reverse strand
signalPos 38smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)
      taeGut2.all_mrna.qName (via mrnaOrientInfo.name)
      taeGut2.refFlat.name (via mrnaOrientInfo.name)
      taeGut2.refGene.name (via mrnaOrientInfo.name)
      taeGut2.refSeqAli.qName (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
601chr121327072136835DQ2143603161380
601chr121327082136835DQ2143613150370
75chr123229662381577DQ2169982150340
75chr123229802381128DQ2170052130360
75chr123229802381128DQ2170072140370
75chr123229802381381DQ217011216000
75chr123229802381436DQ21698920000
75chr123229802381485DQ2170082150350
75chr123229802381579DQ216980214000
75chr123229802381579DQ2169812140300

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.