Schema for xenoRefSeqAli
  Database: tetNig1    Primary Table: xenoRefSeqAli    Row Count: 565,864   Data last updated: 2020-09-01
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 1033smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 84int(10) unsigned Number of bases that match that aren't repeats
misMatches 21int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 2int(10) unsigned Number of inserts in query
qBaseInsert 361int(10) unsigned Number of bases inserted in query
tNumInsert 2int(10) unsigned Number of inserts in target
tBaseInsert 557int(10) unsigned Number of bases inserted in target
strand +-char(2) + or - for strand. First character query, second target (optional)
qName NR_158092varchar(255) Query sequence name
qSize 1370int(10) unsigned Query sequence size
qStart 444int(10) unsigned Alignment start position in query
qEnd 910int(10) unsigned Alignment end position in query
tName chrUn_randomvarchar(255) Target sequence name
tSize 171761319int(10) unsigned Target sequence size
tStart 58762251int(10) unsigned Alignment start position in target
tEnd 58762913int(10) unsigned Alignment end position in target
blockCount 3int(10) unsigned Number of blocks in alignment
blockSizes 21,42,42,longblob Size of each block
qStarts 444,809,868,longblob Start of each block in query.
tStarts 112998406,112998966,112999026,longblob Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoRefSeqAli.qName)
      hgFixed.gbMiscDiff.acc (via xenoRefSeqAli.qName)
      hgFixed.gbWarn.acc (via xenoRefSeqAli.qName)
      tetNig1.all_mrna.qName (via xenoRefSeqAli.qName)
      tetNig1.xenoMrna.qName (via xenoRefSeqAli.qName)
      tetNig1.xenoRefGene.name (via xenoRefSeqAli.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
103384210023612557+-NR_1580921370444910chrUn_random1717613195876225158762913321,42,42,444,809,868,112998406,112998966,112999026,
5852771520045375107679+-NM_001111137297010111977chr11682709154108162627,51,36,87,87,141,1011,1120,1320,1356,1608,1836,16718929,16719056,16726472,16734941,16754013,16826896,
5856503640077239108593+-NM_0539425247961833chr1168270911201097271099,84,15,36,60,229,101,186,141,63,96,228,371,684,750,963,1192,1293,1557,1770,16717364,16777550,16778017,16778327,16780915,16784895,16820206,16823391,16826698,16826908,
5853521980051019630567+-NM_00101478325554001969chr11682709112931246751,13,130,113,36,135,72,400,530,733,863,1162,1717,1897,16795845,16795975,16796172,16806516,16823109,16826710,16826890,
5853142050041089420426+-NM_03359550806242232chr11682709124621191581,57,42,150,189,624,801,909,1113,2043,16805900,16825405,16825513,16825717,16826656,
5852861490041044426988+-NM_00119866926854261905chr11682709124627669563,63,126,72,111,426,1071,1224,1377,1794,16799422,16815632,16820037,16820190,16826734,
66711340000000++NM_0247023158296449chr31467970010800148108003011153,296,10800148,
6674021940041994597+-NM_0246191822185980chr3146797001080753010808723593,39,87,35,342,185,356,434,582,638,3870977,3871246,3871445,3871695,3871828,
585410217005852526796+-NM_03185223702251704chr11682709124627669666,33,162,147,72,147,225,366,579,897,1176,1557,16799422,16799884,16806392,16806710,16820190,16826698,
585508299006672733850+-NM_00113303746273751854chr11682709124634903863,36,267,63,38,121,72,147,375,516,726,1020,1140,1178,1326,1707,16792188,16799884,16806389,16815632,16818061,16820042,16820190,16826698,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.