Schema for xenoMrna
  Database: tetNig2    Primary Table: xenoMrna    Row Count: 5,307,069   Data last updated: 2020-08-20
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 145int(10) unsigned Number of bases that match that aren't repeats
misMatches 18int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 2int(10) unsigned Number of inserts in query
qBaseInsert 119int(10) unsigned Number of bases inserted in query
tNumInsert 2int(10) unsigned Number of inserts in target
tBaseInsert 116int(10) unsigned Number of bases inserted in target
strand +-char(2) + or - for strand. First character query, second target (optional)
qName JU371406varchar(255) Query sequence name
qSize 420int(10) unsigned Query sequence size
qStart 135int(10) unsigned Alignment start position in query
qEnd 417int(10) unsigned Alignment end position in query
tName chr1varchar(255) Target sequence name
tSize 22981688int(10) unsigned Target sequence size
tStart 2026int(10) unsigned Alignment start position in target
tEnd 2305int(10) unsigned Alignment end position in target
blockCount 3int(10) unsigned Number of blocks in alignment
blockSizes 70,72,21,longblob Size of each block
qStarts 135,267,396,longblob Start of each block in query.
tStarts 22979383,22979506,22979641,longblob Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoMrna.qName)
      hgFixed.gbMiscDiff.acc (via xenoMrna.qName)
      hgFixed.gbSeq.acc (via xenoMrna.qName)
      hgFixed.gbWarn.acc (via xenoMrna.qName)
      hgFixed.imageClone.acc (via xenoMrna.qName)
      tetNig2.all_mrna.qName (via xenoMrna.qName)
      tetNig2.xenoRefGene.name (via xenoMrna.qName)
      tetNig2.xenoRefSeqAli.qName (via xenoMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
585145180021192116+-JU371406420135417chr12298168820262305370,72,21,135,267,396,22979383,22979506,22979641,
585225180031663153+-JO66103058718427chr12298168820772473427,30,81,105,18,47,179,322,22979215,22979245,22979372,22979506,
585384440083256314+-JL568524989121874chr12298168820772819960,19,55,15,35,27,30,82,105,121,200,220,414,436,474,503,629,769,22978869,22978945,22978964,22979160,22979180,22979215,22979245,22979371,22979506,
5855336900115819567+-JL4870371250591242chr122981688207732461225,60,51,42,75,55,15,35,27,30,82,105,59,87,246,322,470,584,778,800,838,867,996,1137,22978442,22978467,22978618,22978693,22978854,22978964,22979160,22979180,22979215,22979245,22979371,22979506,
585124917802081322621853225+-JW572310406703897chr12298168820805694020189,231,215,73,62,89,215,46,46,17,81,65,54,10,35,23,34,12,36,102,0,189,420,698,771,833,922,1276,1602,2091,2373,2698,3202,3394,3419,3457,3480,3634,3678,3795,22924748,22924938,22925172,22925450,22970359,22971193,22976516,22976854,22977179,22977900,22978189,22978449,22978965,22979159,22 ...
585188043201751422861781719+-JW572309494414774chr12298168820808628619771,471,318,62,89,215,46,46,17,81,65,54,10,35,23,34,12,36,102,1,811,1330,1648,1710,1799,2153,2479,2968,3250,3575,4079,4271,4296,4334,4357,4511,4555,4672,22895402,22896212,22896732,22970359,22971193,22976516,22976854,22977179,22977900,22978189,22978449,22978965,22979159,22979182,22 ...
58549114001742632811007+-JT4025923550463326chr1229816882123137789237,51,90,2,79,96,18,18,57,46,292,343,433,435,514,628,1968,3269,22967910,22970359,22971188,22971319,22976514,22976596,22976713,22978195,22979508,
5851121300167153+-EZ857023528225417chr12298168821392317282,43,225,374,22979371,22979506,
5851121300167153+-FX361109614236428chr12298168821392317282,43,236,385,22979371,22979506,
585117170034823450+-EZ8595967053619chr12298168821412725466,21,14,33,3,284,428,586,22978963,22979245,22979370,22979514,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.