Schema for xenoRefFlat
  Database: triMan1    Primary Table: xenoRefFlat    Row Count: 317,566   Data last updated: 2020-08-20
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName SNAPC5varchar(255) values Name of gene as it appears in genome browser.
name NM_001046573varchar(255) values Name of gene
chrom JH594636varchar(255) values Reference sequence chromosome or scaffold
strand -char(1) values + or - for strand
txStart 12032478int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 12035985int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 12033473int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 12035985int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 9int(10) unsigned range Number of exons
exonStarts 12032478,12032593,12032914,...longblob   Exon start positions (or end positions for minus strand item)
exonEnds 12032568,12032650,12032932,...longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)
      triMan1.xenoMrna.qName (via xenoRefFlat.name)
      triMan1.xenoRefGene.name (via xenoRefFlat.name)
      triMan1.xenoRefSeqAli.qName (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
SNAPC5NM_001046573JH594636-12032478120359851203347312035985912032478,12032593,12032914,12033111,12033317,12033450,12033522,12034566,12035895,12032568,12032650,12032932,12033300,12033398,12033483,12033591,12034656,12035985,
IDH1NM_001265779JH594625-452806545305354529240453044164528065,4528283,4528563,4529075,4529750,4530481,4528233,4528395,4528624,4529749,4530469,4530535,
Flot2NM_001270801JH594744+1133032115051211454811149291181133032,1133103,1143286,1145465,1146579,1147150,1147387,1147597,1147810,1148443,1148991,1149252,1149322,1149969,1150141,1150213, ...1133068,1133164,1143382,1145556,1146703,1147269,1147497,1147721,1148025,1148627,1149141,1149297,1149455,1150050,1150156,1150223, ...
casd1NM_001278180JH594762-5783801585092857838015850907185783801,5785883,5789928,5790572,5792240,5796076,5797259,5808650,5808848,5809933,5810248,5812609,5812717,5822434,5839128,5840067, ...5784010,5785965,5790012,5790695,5792333,5796235,5797379,5808653,5808935,5810074,5810353,5812666,5812818,5822558,5839248,5840155, ...
PRDX6NM_001280704JH594685+229988823007582299903230057032299888,2300183,2300582,2300183,2300570,2300758,
IFT22NM_001283136JH594649-14536437145370211453645714537015114536437,14537021,
Gpcpd1NM_001291051JH594710-3914407397481839156183941406253914407,3914544,3914688,3914784,3914921,3915138,3915391,3915588,3921309,3922038,3922839,3924399,3927949,3931809,3932796,3936063, ...3914514,3914655,3914719,3914878,3914961,3915224,3915537,3915808,3921475,3922169,3922976,3924465,3928038,3931875,3932886,3936121, ...
OPN1LWNM_001009871JH594915+8394368539698394368539606839436,843950,846699,848034,849624,853849,839543,844247,846868,848200,849864,853969,
LOC105474435NM_001305913AHIN01157145+064430644350,5223,5477,5790,6288,38,5469,5480,6069,6443,
NIF3L1NM_001285323JH594662+825665682690228256673826894578256656,8257978,8261115,8262487,8264262,8268760,8268977,8257106,8258141,8261242,8262626,8264346,8268946,8269022,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.