Schema for mrnaOrientInfo
  Database: tupBel1    Primary Table: mrnaOrientInfo    Row Count: 298   Data last updated: 2017-11-23
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom scaffold_103110.1-3910varchar(255) values Reference sequence chromosome or scaffold
chromStart 3630int(10) unsigned range Start position in chromosome
chromEnd 3730int(10) unsigned range End position in chromosome
name Z75079varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 2smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)
      tupBel1.all_mrna.qName (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585scaffold_103110.1-391036303730Z7507902000
585scaffold_104597.1-1452567459994AJ313090500220
585scaffold_104597.1-1452567459994AJ313091500220
585scaffold_104608.1-412640094126Z7507700000
585scaffold_111741.1-1917225183263788AF28167378000
585scaffold_113160.1-1436422967743148AY70151921000
588scaffold_113571.1-535899498539498684DQ45350800000
586scaffold_114271.1-430011155386155539AY69981200000
586scaffold_117417.1-359695183292185457AY69981320000
585scaffold_120430.1-386635118941121242AY69981611000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.