Schema for xenoRefSeqAli
  Database: tupBel1    Primary Table: xenoRefSeqAli    Row Count: 845,862   Data last updated: 2020-08-20
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 632int(10) unsigned Number of bases that match that aren't repeats
misMatches 110int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 2int(10) unsigned Number of inserts in query
qBaseInsert 114int(10) unsigned Number of bases inserted in query
tNumInsert 2int(10) unsigned Number of inserts in target
tBaseInsert 117int(10) unsigned Number of bases inserted in target
strand ++char(2) + or - for strand. First character query, second target (optional)
qName NM_001100973varchar(255) Query sequence name
qSize 1149int(10) unsigned Query sequence size
qStart 293int(10) unsigned Alignment start position in query
qEnd 1149int(10) unsigned Alignment end position in query
tName scaffold_1.1-51135varchar(255) Target sequence name
tSize 51135int(10) unsigned Target sequence size
tStart 30287int(10) unsigned Alignment start position in target
tEnd 31146int(10) unsigned Alignment end position in target
blockCount 3int(10) unsigned Number of blocks in alignment
blockSizes 568,54,120,longblob Size of each block
qStarts 293,867,1029,longblob Start of each block in query.
tStarts 30287,30867,31026,longblob Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoRefSeqAli.qName)
      hgFixed.gbMiscDiff.acc (via xenoRefSeqAli.qName)
      hgFixed.gbSeq.acc (via xenoRefSeqAli.qName)
      hgFixed.gbWarn.acc (via xenoRefSeqAli.qName)
      hgFixed.imageClone.acc (via xenoRefSeqAli.qName)
      tupBel1.all_est.qName (via xenoRefSeqAli.qName)
      tupBel1.all_mrna.qName (via xenoRefSeqAli.qName)
      tupBel1.xenoRefFlat.name (via xenoRefSeqAli.qName)
      tupBel1.xenoRefGene.name (via xenoRefSeqAli.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
5856321100021142117++NM_00110097311492931149scaffold_1.1-511355113530287311463568,54,120,293,867,1029,30287,30867,31026,
5855811300011441147++NM_05311731434701325scaffold_1.1-511355113530288311462567,144,470,1181,30288,31002,
58522429002200822640++NM_03064531488853146scaffold_122449.1-51855185128541783169,33,51,885,2632,3095,1285,3775,4127,
5855605800167512820++NM_032168264725710scaffold_12245.1-1296251296257561589053680,130,66,91,127,124,25,105,235,301,392,586,75615,79049,83452,85084,86212,88929,
585760137009123291641++NM_00109810033065122641scaffold_1.1-5113551135303493288710587,42,105,36,9,13,27,24,21,33,512,1102,1171,1316,1570,1584,2320,2409,2533,2608,30349,30948,31041,31219,31461,31478,32592,32685,32802,32854,
585296121002692336++NM_0010396022465309795scaffold_26704.1-1972197293816913243,102,72,309,570,723,938,1378,1619,
58531290000000++NM_0010462741373560962scaffold_1.1-511355113530369307711402,560,30369,
5858112000000++NR_14572312816109scaffold_121091.1-136279136279103937104030193,16,103937,
737410002350264455++NM_001363725789758346268scaffold_129067.1-27299027299099254163793318,42,24,5834,5956,6244,99254,102177,163769,
58523985000000+-NM_06024138442366scaffold_110069.1-940859408555318556421324,42,38443,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.