Schema for ensGene
  Database: vicPac1    Primary Table: ensGene    Row Count: 22,970   Data last updated: 2019-01-11
Format description: A gene prediction with some additional info.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 9smallint(5) unsigned range Indexing field to speed chromosome range queries.
name ENSVPAT00000000583.1varchar(255) values Name of gene (usually transcript_id from GTF)
chrom scaffold_0varchar(255) values Reference sequence chromosome or scaffold
strand +char(1) values + or - for strand
txStart 353320int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 1907894int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 353320int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 1907894int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 16int(10) unsigned range Number of exons
exonStarts 353320,359185,405825,752848...longblob   Exon start positions (or end positions for minus strand item)
exonEnds 354029,359192,405855,753150...longblob   Exon end positions (or start positions for minus strand item)
score 0int(11) range score
name2 ENSVPAG00000000581.1varchar(255) values Alternate name (e.g. gene_id from GTF)
cdsStartStat cmplenum('none', 'unk', 'incmpl', 'cmpl') values Status of CDS start annotation (none, unknown, incomplete, or complete)
cdsEndStat cmplenum('none', 'unk', 'incmpl', 'cmpl') values Status of CDS end annotation (none, unknown, incomplete, or complete)
exonFrames 0,1,1,1,0,0,0,1,1,2,1,1,0,1...longblob   Reading frame of the start of the CDS region of the exon, in the direction of transcription (0,1,2), or -1 if there is no CDS region.

Connected Tables and Joining Fields
        knownGeneV39.knownToEnsembl.value (via ensGene.name)
      vicPac1.ensGtp.transcript (via ensGene.name)
      vicPac1.ensPep.name (via ensGene.name)
      vicPac1.ensemblSource.name (via ensGene.name)
      vicPac1.ensemblToGeneName.name (via ensGene.name)

Sample Rows
 
binnamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEndsscorename2cdsStartStatcdsEndStatexonFrames
9ENSVPAT00000000583.1scaffold_0+3533201907894353320190789416353320,359185,405825,752848,759413,815445,916885,1051968,1060067,1061235,1062222,1079688,1714843,1745138,1851449,1907271,354029,359192,405855,753150,759575,815884,916916,1052088,1060449,1061426,1062396,1079808,1715015,1745446,1851528,1907894,0ENSVPAG00000000581.1cmplcmpl0,1,1,1,0,0,0,1,1,2,1,1,0,1,0,1,
589ENSVPAT00000000584.1scaffold_0-5365145365805365145365801536514,536580,0ENSVPAG00000000584.1incmplincmpl0,
596ENSVPAT00000016146.1scaffold_0+149429014944111494411149441111494290,1494411,0ENSVPAG00000017374.1nonenone-1,
599ENSVPAT00000017985.1scaffold_0+192970819298411929841192984111929708,1929841,0ENSVPAG00000017998.1nonenone-1,
75ENSVPAT00000000585.1scaffold_0-222679822379272226798223792762226798,2227175,2227525,2237707,2237874,2237906,2226816,2227523,2227747,2237872,2237904,2237927,0ENSVPAG00000000585.1incmplcmpl0,0,0,0,0,0,
75ENSVPAT00000000586.1scaffold_0-2451904281854524519042818545252451904,2451972,2458800,2478964,2482292,2510936,2530514,2667966,2681100,2681118,2685435,2699270,2705868,2713725,2741285,2746598, ...2451970,2452016,2458909,2479078,2482370,2510960,2530564,2668159,2681117,2681161,2685612,2699435,2706519,2714076,2741437,2746728, ...0ENSVPAG00000000586.1incmplcmpl0,1,0,0,0,0,1,0,1,0,0,0,0,0,1,0,0,0,0,2,0,1,0,0,0,
603ENSVPAT00000016445.1scaffold_0+245404024541472454147245414712454040,2454147,0ENSVPAG00000016659.1nonenone-1,
605ENSVPAT00000017994.1scaffold_0+263986726400152640015264001512639867,2640015,0ENSVPAG00000018007.1nonenone-1,
607ENSVPAT00000000587.1scaffold_0+292354729905242923547299052492923547,2928904,2946485,2948899,2950365,2953632,2963503,2986960,2989110,2923618,2928979,2946560,2948974,2950443,2953701,2963581,2987149,2990524,0ENSVPAG00000000588.1incmplcmpl0,2,2,2,2,2,2,2,2,
608ENSVPAT00000000588.1scaffold_0-302542730623183025427306231883025427,3037024,3040768,3043392,3044662,3048740,3054272,3062216,3025535,3037114,3041089,3043526,3044738,3048805,3054474,3062318,0ENSVPAG00000000589.1cmplincmpl0,0,0,1,0,1,0,0,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.