Schema for intronEst
  Database: vicPac2    Primary Table: intronEst    Row Count: 194   Data last updated: 2013-06-18
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 589smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 842int(10) unsigned range Number of bases that match that aren't repeats
misMatches 13int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 1int(10) unsigned range Number of inserts in query
qBaseInsert 1int(10) unsigned range Number of bases inserted in query
tNumInsert 9int(10) unsigned range Number of inserts in target
tBaseInsert 984int(10) unsigned range Number of bases inserted in target
strand +char(2) values + or - for strand. First character query, second target (optional)
qName EH218999varchar(255) values Query sequence name
qSize 1016int(10) unsigned range Query sequence size
qStart 137int(10) unsigned range Alignment start position in query
qEnd 993int(10) unsigned range Alignment end position in query
tName KB632635varchar(255) values Target sequence name
tSize 3126999int(10) unsigned range Target sequence size
tStart 557950int(10) unsigned range Alignment start position in target
tEnd 559789int(10) unsigned range Alignment end position in target
blockCount 11int(10) unsigned range Number of blocks in alignment
blockSizes 15,6,12,8,11,43,88,27,73,13...longblob   Size of each block
qStarts 137,152,158,170,178,189,232...longblob   Start of each block in query.
tStarts 557950,557966,557973,557986...longblob   Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via intronEst.qName)
      hgFixed.gbSeq.acc (via intronEst.qName)
      hgFixed.imageClone.acc (via intronEst.qName)
      vicPac2.all_est.qName (via intronEst.qName)
      vicPac2.estOrientInfo.name (via intronEst.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
5898421300119984+EH2189991016137993KB63263531269995579505597891115,6,12,8,11,43,88,27,73,131,441,137,152,158,170,178,189,232,320,348,421,552,557950,557966,557973,557986,557995,558007,558169,558765,558792,559141,559348,
712155500243419+ES26354324738202KB6324362432686516663342166639214112,31,8,9,38,150,184,193,16663342,16663861,16663902,16663912,
712100100243419+ES6089841440105KB632436243268651666340116663921453,31,8,9,0,53,87,96,16663401,16663861,16663902,16663912,
605225200002526+ES4440822600227KB6324382167291326430672643820346,25,156,0,46,71,2643067,2643114,2643664,
6125694001312554+ES6090406070576KB6324431842948936635563666683374,304,195,0,74,381,3663556,3666184,3666488,
700229200001231+ES7686572540231KB632446175859231518603715186499261,170,0,61,15186037,15186329,
700229200001231+ES7687302540231KB632446175859231518603715186499261,170,0,61,15186037,15186329,
700229200111231+ES7687602550232KB632446175859231518603715186499361,13,157,0,61,75,15186037,15186329,15186342,
664113000001385+ES4441401490113KB632449165839581040111910401617244,69,0,44,10401119,10401548,
5944413000041860+ES7685144723447KB6324561403450913044561306760528,107,100,176,33,3,31,138,238,414,1304456,1305170,1305693,1306326,1306727,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.