Schema for intronEst
  Database: xenTro10    Primary Table: intronEst    Row Count: 734,781   Data last updated: 2021-03-24
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 586smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 327int(10) unsigned Number of bases that match that aren't repeats
misMatches 0int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 0int(10) unsigned Number of inserts in query
qBaseInsert 0int(10) unsigned Number of bases inserted in query
tNumInsert 1int(10) unsigned Number of inserts in target
tBaseInsert 317int(10) unsigned Number of bases inserted in target
strand +char(2) + or - for strand. First character query, second target (optional)
qName AL885874varchar(255) Query sequence name
qSize 370int(10) unsigned Query sequence size
qStart 25int(10) unsigned Alignment start position in query
qEnd 352int(10) unsigned Alignment end position in query
tName chr1varchar(255) Target sequence name
tSize 217471166int(10) unsigned Target sequence size
tStart 200864int(10) unsigned Alignment start position in target
tEnd 201508int(10) unsigned Alignment end position in target
blockCount 2int(10) unsigned Number of blocks in alignment
blockSizes 201,126,longblob Size of each block
qStarts 25,226,longblob Start of each block in query.
tStarts 200864,201382,longblob Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via intronEst.qName)
      hgFixed.gbSeq.acc (via intronEst.qName)
      hgFixed.imageClone.acc (via intronEst.qName)
      xenTro10.all_est.qName (via intronEst.qName)
      xenTro10.estOrientInfo.name (via intronEst.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
586327000001317+AL88587437025352chr12174711662008642015082201,126,25,226,200864,201382,
5866460010043724-AL6366716514651chr12174711662009212052925144,124,147,210,22,0,144,268,415,625,200921,201382,203466,205059,205270,
5866270000033723-AL8643186369636chr12174711662009392052894126,124,147,230,0,126,250,397,200939,201382,203466,205059,
5866170000033723-AL86557863215632chr12174711662009522052924113,124,147,233,0,113,237,384,200952,201382,203466,205059,
5866150000033723-AL85374062914629chr12174711662009542052924111,124,147,233,0,111,235,382,200954,201382,203466,205059,
5866473001146169-AL6583476510651chr12174711662009542077735111,124,147,229,39,0,111,235,382,612,200954,201382,203466,205059,207734,
5865920000033723-AL7887505920592chr1217471166200969205284496,124,147,225,0,96,220,367,200969,201382,203466,205059,
5866201000046167-AL7820206210621chr1217471166200973207761592,124,147,231,27,0,92,216,363,594,200973,201382,203466,205059,207734,
5866282001146167-AL6590136310631chr1217471166200976207773689,124,147,231,4,35,0,89,213,360,591,596,200976,201382,203466,205059,207734,207738,
5865890000043724-AL78696060314603chr1217471166200979205292586,124,147,190,42,0,86,210,357,547,200979,201382,203466,205059,205250,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.