Schema for estOrientInfo
  Database: xenTro3    Primary Table: estOrientInfo    Row Count: 1,320,300   Data last updated: 2014-05-31
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
chrom GL172637varchar(255) Reference sequence chromosome or scaffold
chromStart 17461int(10) unsigned Start position in chromosome
chromEnd 24767int(10) unsigned End position in chromosome
name AL778536varchar(255) Accession of EST
intronOrientation 1smallint(6) Orientation of introns with respect to EST
sizePolyA 0smallint(6) Number of trailing A's
revSizePolyA 0smallint(6) Number of trailing A's on reverse strand
signalPos 0smallint(6) Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)
      xenTro3.all_est.qName (via estOrientInfo.name)
      xenTro3.intronEst.qName (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585GL1726371746124767AL77853610000
585GL1726372009025079AL59430700000
585GL1726375744758282AL879855000014
585GL1726377595491597AL85481760000
585GL1726377618591607AL64528950000
585GL1726377655891672AL79676140000
585GL1726378168491597AL86562640000
585GL1726378177491656AL79171640000
585GL1726378694391672AL79480230000
586GL172637260408261015AL67636200000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.