Schema for intronEst
  Database: xenTro9    Primary Table: intronEst    Row Count: 724,057   Data last updated: 2017-03-28
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 622smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 357int(10) unsigned Number of bases that match that aren't repeats
misMatches 2int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 0int(10) unsigned Number of inserts in query
qBaseInsert 0int(10) unsigned Number of bases inserted in query
tNumInsert 1int(10) unsigned Number of inserts in target
tBaseInsert 1253int(10) unsigned Number of bases inserted in target
strand -char(2) + or - for strand. First character query, second target (optional)
qName AL970242varchar(255) Query sequence name
qSize 371int(10) unsigned Query sequence size
qStart 0int(10) unsigned Alignment start position in query
qEnd 359int(10) unsigned Alignment end position in query
tName chr1varchar(255) Target sequence name
tSize 194866763int(10) unsigned Target sequence size
tStart 4854171int(10) unsigned Alignment start position in target
tEnd 4855783int(10) unsigned Alignment end position in target
blockCount 2int(10) unsigned Number of blocks in alignment
blockSizes 237,122,longblob Size of each block
qStarts 12,249,longblob Start of each block in query.
tStarts 4854171,4855661,longblob Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via intronEst.qName)
      hgFixed.gbSeq.acc (via intronEst.qName)
      hgFixed.imageClone.acc (via intronEst.qName)
      xenTro9.all_est.qName (via intronEst.qName)
      xenTro9.estOrientInfo.name (via intronEst.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
6223572000011253-AL9702423710359chr1194866763485417148557832237,122,12,249,4854171,4855661,
77673102007224030-AL6444426760676chr119486676348569445081650842,20,84,58,213,117,104,38,0,42,62,146,204,417,534,638,4856944,4856987,4858390,4865543,4867642,4868052,4870327,5081612,
77613100003213536-AL6367106206620chr1194866763486774250818924113,117,104,280,0,113,230,334,4867742,4868052,4870327,5081612,
6243631902237344-AL6472363750375chr1194866763519785052055676178,61,30,64,31,9,0,178,240,270,335,366,5197850,5199458,5199519,5205097,5205161,5205558,
63124120011037728+AL848169652261514chr1194866763605675160647224150,43,42,8,261,411,454,506,6056751,6064280,6064663,6064714,
63120550011037728+AL8576912580220chr1194866763605678460647224117,43,42,8,0,117,160,212,6056784,6064280,6064663,6064714,
6314441000012002+AL894586655210655chr1194866763607822760806742353,92,210,563,6078227,6080582,
6316393000032447+AL89991565715657chr1194866763608215260852414179,124,126,213,15,194,318,444,6082152,6082917,6083848,6085028,
63153149400021055+AL8809826290629chr119486676360839356085619339,351,239,0,39,390,6083935,6085028,6085380,
632550400111332665+AL87003564669634chr119486676361971086230327411,306,156,81,69,91,397,553,6197108,6197131,6197438,6230246,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.