Schema for xenoMrna
  Database: allMis1    Primary Table: xenoMrna    Row Count: 6,614,012   Data last updated: 2020-08-17
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 101int(10) unsigned Number of bases that match that aren't repeats
misMatches 45int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 1int(10) unsigned Number of 'N' bases
qNumInsert 1int(10) unsigned Number of inserts in query
qBaseInsert 39int(10) unsigned Number of bases inserted in query
tNumInsert 1int(10) unsigned Number of inserts in target
tBaseInsert 39int(10) unsigned Number of bases inserted in target
strand +-char(2) + or - for strand. First character query, second target (optional)
qName X64563varchar(255) Query sequence name
qSize 1943int(10) unsigned Query sequence size
qStart 1104int(10) unsigned Alignment start position in query
qEnd 1290int(10) unsigned Alignment end position in query
tName AKHW01000064varchar(255) Target sequence name
tSize 1653int(10) unsigned Target sequence size
tStart 990int(10) unsigned Alignment start position in target
tEnd 1176int(10) unsigned Alignment end position in target
blockCount 2int(10) unsigned Number of blocks in alignment
blockSizes 45,102,longblob Size of each block
qStarts 1104,1188,longblob Start of each block in query.
tStarts 477,561,longblob Start of each block in target.

Connected Tables and Joining Fields
        allMis1.all_est.qName (via xenoMrna.qName)
      allMis1.all_mrna.qName (via xenoMrna.qName)
      allMis1.refGene.name (via xenoMrna.qName)
      allMis1.refSeqAli.qName (via xenoMrna.qName)
      allMis1.xenoRefFlat.name (via xenoMrna.qName)
      allMis1.xenoRefGene.name (via xenoMrna.qName)
      allMis1.xenoRefSeqAli.qName (via xenoMrna.qName)
      hgFixed.gbCdnaInfo.acc (via xenoMrna.qName)
      hgFixed.gbMiscDiff.acc (via xenoMrna.qName)
      hgFixed.gbSeq.acc (via xenoMrna.qName)
      hgFixed.gbWarn.acc (via xenoMrna.qName)
      hgFixed.imageClone.acc (via xenoMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
5851014501139139+-X64563194311041290AKHW0100006416539901176245,102,1104,1188,477,561,
5851479702139139+-CR70484714837531038AKHW01000064165399012752144,102,753,936,378,561,
5855723010000+-BC138290121611151196AKHW0100006416539991080181,1115,573,
5855723010000+-BC138291121611151196AKHW0100006416539991080181,1115,573,
5857220010000+-KF158417133711351228AKHW0100006416539991092193,1135,561,
5857421010000+-AF064546119810711167AKHW0100006416539991095196,1071,558,
5857124010000+-AR266831187311361232AKHW0100006416539991095196,1136,558,
5857124010000+-V00383187311361232AKHW0100006416539991095196,1136,558,
5851053201139139+-GQ855216212811381315AKHW0100006416539991176245,93,1138,1222,477,561,
5851063101139139+-KA324983157411191296AKHW0100006416539991176245,93,1119,1203,477,561,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.