Schema for xenoRefSeqAli
  Database: anoCar1    Primary Table: xenoRefSeqAli    Row Count: 436,133   Data last updated: 2020-08-20
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 587smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 795int(10) unsigned range Number of bases that match that aren't repeats
misMatches 118int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 1int(10) unsigned range Number of inserts in target
tBaseInsert 1int(10) unsigned range Number of bases inserted in target
strand +-char(2) values + or - for strand. First character query, second target (optional)
qName NM_001031816varchar(255) values Query sequence name
qSize 1176int(10) unsigned range Query sequence size
qStart 183int(10) unsigned range Alignment start position in query
qEnd 1096int(10) unsigned range Alignment end position in query
tName scaffold_0varchar(255) values Target sequence name
tSize 16654889int(10) unsigned range Target sequence size
tStart 284228int(10) unsigned range Alignment start position in target
tEnd 285142int(10) unsigned range Alignment end position in target
blockCount 2int(10) unsigned range Number of blocks in alignment
blockSizes 880,33,longblob   Size of each block
qStarts 183,1063,longblob   Start of each block in query.
tStarts 16369747,16370628,longblob   Start of each block in target.

Connected Tables and Joining Fields
        anoCar1.all_mrna.qName (via xenoRefSeqAli.qName)
      anoCar1.xenoMrna.qName (via xenoRefSeqAli.qName)
      anoCar1.xenoRefFlat.name (via xenoRefSeqAli.qName)
      anoCar1.xenoRefGene.name (via xenoRefSeqAli.qName)
      hgFixed.gbCdnaInfo.acc (via xenoRefSeqAli.qName)
      hgFixed.gbMiscDiff.acc (via xenoRefSeqAli.qName)
      hgFixed.gbSeq.acc (via xenoRefSeqAli.qName)
      hgFixed.gbWarn.acc (via xenoRefSeqAli.qName)
      hgFixed.imageClone.acc (via xenoRefSeqAli.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
587795118000011+-NM_00103181611761831096scaffold_0166548892842282851422880,33,183,1063,16369747,16370628,
587773139001112+-NM_00119023111731831096scaffold_0166548892842282851422882,30,183,1066,16369747,16370631,
587785128000011+-NM_00125709911731831096scaffold_0166548892842282851422880,33,183,1063,16369747,16370628,
587728159000000+-NM_00111316712812181105scaffold_0166548892842552851421887,218,16369747,
587740147000000+-NM_00921638696111498scaffold_0166548892842552851421887,611,16369747,
587744143000000+-NM_01271939066481535scaffold_0166548892842552851421887,648,16369747,
58756420800172178+-NM_0011246431755147991scaffold_0166548892842952851452393,379,147,612,16369744,16370215,
5875272000021162122+-NM_00112453417706221465scaffold_0166548892842962851453393,216,118,622,1096,1347,16369744,16370224,16370475,
58835656000000++NM_00353248220432scaffold_47410243844767134771251412,20,476713,
58756718300178181+-NM_00921913882411069scaffold_0166548892843082851392396,354,241,715,16369750,16370227,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.