Schema for intronEst
  Database: anoCar2    Primary Table: intronEst    Row Count: 52,631   Data last updated: 2016-06-16
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 538int(10) unsigned range Number of bases that match that aren't repeats
misMatches 3int(10) unsigned range Number of bases that don't match
repMatches 281int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 3int(10) unsigned range Number of inserts in query
qBaseInsert 3int(10) unsigned range Number of bases inserted in query
tNumInsert 2int(10) unsigned range Number of inserts in target
tBaseInsert 143int(10) unsigned range Number of bases inserted in target
strand -char(2) values + or - for strand. First character query, second target (optional)
qName FG752229varchar(255) values Query sequence name
qSize 826int(10) unsigned range Query sequence size
qStart 1int(10) unsigned range Alignment start position in query
qEnd 826int(10) unsigned range Alignment end position in query
tName chr1varchar(255) values Target sequence name
tSize 263920458int(10) unsigned range Target sequence size
tStart 4545int(10) unsigned range Alignment start position in target
tEnd 5510int(10) unsigned range Alignment end position in target
blockCount 6int(10) unsigned range Number of blocks in alignment
blockSizes 10,8,8,37,670,89,longblob   Size of each block
qStarts 0,11,19,28,66,736,longblob   Start of each block in query.
tStarts 4545,4555,4564,4572,4609,5421,longblob   Start of each block in target.

Connected Tables and Joining Fields
        anoCar2.all_est.qName (via intronEst.qName)
      anoCar2.estOrientInfo.name (via intronEst.qName)
      hgFixed.gbCdnaInfo.acc (via intronEst.qName)
      hgFixed.gbSeq.acc (via intronEst.qName)
      hgFixed.imageClone.acc (via intronEst.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
58553832810332143-FG7522298261826chr126392045845455510610,8,8,37,670,89,0,11,19,28,66,736,4545,4555,4564,4572,4609,5421,
58545831070332858+FG7123355710571chr126392045879423808496383,34,69,51,17,14,0,383,418,487,539,557,79423,79807,79841,80767,80818,80835,
58571734903363560+FG6712787796778chr1263920458796738400210144,91,157,132,142,37,9,36,14,7,6,150,241,398,530,673,710,719,756,771,79673,79819,80767,82885,83755,83897,83935,83945,83981,83995,
5858072200067847-FG6712308143814chr12639204588083889496786,132,249,116,114,86,28,0,86,218,467,583,697,783,80838,82885,83755,85003,85290,86736,89468,
5856016000051910-FG71228766727634chr1263920458828878540469,49,70,249,116,114,33,42,91,161,410,526,82887,82897,82947,83755,85003,85290,
736103198000727090+FG6963898130811chr12639204582371092650108153,118,479,28,5,7,11,10,0,153,271,750,778,783,790,801,237109,242056,264464,264944,264973,264980,264988,265000,
735667230000222291-FG6964378273806chr126392045824205626515036,111,686,21,27,138,242056,242063,264464,
73317174220111186948+FG77125376912769chr12639204582614854491893487,240,29,12,499,740,261485,448920,449160,
746001026012927809+FG7484856511639chr126392045811727391201184109,4,117,90,40,127,94,133,18,4,1,10,14,133,223,263,390,484,617,635,1172739,1172749,1172761,1175853,1176027,1185064,1197703,1201027,1201161,1201180,
1620717302194441924+FG724782745434633chr4156502444935094799395158358,7,24,84,57,434,442,453,477,576,93509479,93509497,93509505,93681954,93951526,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.