Schema for xenoMrna
  Database: anoCar2    Primary Table: xenoMrna    Row Count: 4,705,680   Data last updated: 2020-08-17
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 73smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 1579int(10) unsigned Number of bases that match that aren't repeats
misMatches 600int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 16int(10) unsigned Number of inserts in query
qBaseInsert 3042int(10) unsigned Number of bases inserted in query
tNumInsert 24int(10) unsigned Number of inserts in target
tBaseInsert 98794int(10) unsigned Number of bases inserted in target
strand +-char(2) + or - for strand. First character query, second target (optional)
qName AF229449varchar(255) Query sequence name
qSize 5469int(10) unsigned Query sequence size
qStart 216int(10) unsigned Alignment start position in query
qEnd 5437int(10) unsigned Alignment end position in query
tName chr1varchar(255) Target sequence name
tSize 263920458int(10) unsigned Target sequence size
tStart 77486int(10) unsigned Alignment start position in target
tEnd 178459int(10) unsigned Alignment end position in target
blockCount 25int(10) unsigned Number of blocks in alignment
blockSizes 87,127,159,62,131,118,4,108...longblob Size of each block
qStarts 216,330,684,849,911,1042,11...longblob Start of each block in query.
tStarts 263741999,263742125,2638000...longblob Start of each block in target.

Connected Tables and Joining Fields
        anoCar2.all_est.qName (via xenoMrna.qName)
      anoCar2.all_mrna.qName (via xenoMrna.qName)
      anoCar2.xenoRefFlat.name (via xenoMrna.qName)
      anoCar2.xenoRefGene.name (via xenoMrna.qName)
      anoCar2.xenoRefSeqAli.qName (via xenoMrna.qName)
      hgFixed.gbCdnaInfo.acc (via xenoMrna.qName)
      hgFixed.gbMiscDiff.acc (via xenoMrna.qName)
      hgFixed.gbSeq.acc (via xenoMrna.qName)
      hgFixed.gbWarn.acc (via xenoMrna.qName)
      hgFixed.imageClone.acc (via xenoMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
731579600001630422498794+-AF22944954692165437chr1263920458774861784592587,127,159,62,131,118,4,108,3,108,120,165,111,68,117,84,2,111,108,78,126,96,30,25,31,216,330,684,849,911,1042,1160,1164,1272,1275,1390,1890,2172,2316,2397,2545,2629,2631,2754,3030,3114,3273,3393,3445,5406,263741999,263742125,263800028,263800900,263808257,263808771,263809053,263810191,263810321,263811698,263813028,263819978,26382521 ...
731485574001530482398914+-AF22945053552165323chr1263920458774861784592487,127,159,62,131,118,4,108,3,108,165,111,68,117,84,2,111,108,78,126,96,30,25,31,216,330,684,849,911,1042,1160,1164,1272,1275,1776,2058,2202,2283,2431,2515,2517,2640,2916,3000,3159,3279,3331,5292,263741999,263742125,263800028,263800900,263808257,263808771,263809053,263810191,263810321,263811698,263819978,263825211,26382574 ...
73287164300176813496071+-D87558420034198chr1263920458788741784593590,138,36,55,255,61,131,120,112,114,114,45,2,172,151,164,110,109,114,117,81,114,119,156,128,4,147,77,120,165,31,69,45,33,15,3,114,291,327,382,637,698,829,951,1063,1177,1293,1338,1340,1512,1663,1828,1947,2056,2170,2319,2401,2515,2721,2877,3005,3009,3165 ...263741999,263742122,263742299,263794099,263799939,263800901,263808257,263808771,263810191,263811699,263813028,263813604,26381377 ...
149199146001941492134793+-KX018654271302619chr68074195580196261802335242367,69,143,195,129,102,109,169,138,183,232,126,37,48,27,82,86,4,126,116,69,135,78,0,67,136,279,474,603,705,814,983,1121,1304,1536,1665,1704,1782,1923,2005,2091,2095,2221,2337,2406,2541,508431,517795,519970,522102,523780,524758,526291,528907,529295,529778,531937,534414,534540,535508,535583,539065,539621,539775,53 ...
585520970000716372++CR7240811285341958chrUn_GL34380520361324487414768134,27,91,69,78,63,70,85,341,475,502,593,662,740,803,873,24487,26977,27005,28967,36010,37861,39187,41391,
585521960000816372++CR7241771163342959chrUn_GL34380520361324487414769134,27,91,69,78,3,60,70,85,342,476,503,594,663,741,744,804,874,24487,26977,27005,28967,36010,36146,37864,39187,41391,
58565218702831531018047++AK31287112272071227chrUn_GL34378418862412508314221179,38,81,45,85,86,118,59,125,94,57,207,286,324,495,540,625,711,829,921,1046,1170,12508,12853,12978,18151,19961,23653,26092,26690,29045,29315,31365,
58564419502831531018047++AY9507861080491069chrUn_GL34378418862412508314221177,40,81,45,85,86,118,59,127,92,57,49,126,166,337,382,467,553,671,763,890,1012,12508,12851,12978,18151,19961,23653,26092,26690,29045,29317,31365,
7315655001923164797+-FX35372982860363chrUn_GL34377224304368856233864465,26,56,64,60,125,151,299,9179,31711,173891,174123,
7336718005021384164423+-KA52624311244739chrUn_GL34377224304368856233876580,27,208,135,147,4,84,111,436,592,9167,9331,32077,173884,174040,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.