Schema for all_est
  Database: anoGam3    Primary Table: all_est    Row Count: 151,395   Data last updated: 2018-01-05
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 664smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 565int(10) unsigned range Number of bases that match that aren't repeats
misMatches 9int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 3int(10) unsigned range Number of inserts in query
qBaseInsert 11int(10) unsigned range Number of bases inserted in query
tNumInsert 5int(10) unsigned range Number of inserts in target
tBaseInsert 155int(10) unsigned range Number of bases inserted in target
strand +char(2) values + or - for strand. First character query, second target (optional)
qName AA413325varchar(255) values Query sequence name
qSize 590int(10) unsigned range Query sequence size
qStart 5int(10) unsigned range Alignment start position in query
qEnd 590int(10) unsigned range Alignment end position in query
tName chr2Lvarchar(255) values Target sequence name
tSize 49364325int(10) unsigned range Target sequence size
tStart 10356718int(10) unsigned range Alignment start position in target
tEnd 10357447int(10) unsigned range Alignment end position in target
blockCount 8int(10) unsigned range Number of blocks in alignment
blockSizes 169,22,53,218,37,37,33,5,longblob   Size of each block
qStarts 5,183,205,258,477,514,551,585,longblob   Start of each block in query.
tStarts 10356718,10356898,10357061,...longblob   Start of each block in target.

Connected Tables and Joining Fields
        anoGam3.all_mrna.qName (via all_est.qName)
      anoGam3.estOrientInfo.name (via all_est.qName)
      anoGam3.intronEst.qName (via all_est.qName)
      anoGam3.xenoMrna.qName (via all_est.qName)
      anoGam3.xenoRefGene.name (via all_est.qName)
      anoGam3.xenoRefSeqAli.qName (via all_est.qName)
      hgFixed.gbCdnaInfo.acc (via all_est.qName)
      hgFixed.gbMiscDiff.acc (via all_est.qName)
      hgFixed.gbSeq.acc (via all_est.qName)
      hgFixed.gbWarn.acc (via all_est.qName)
      hgFixed.imageClone.acc (via all_est.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
6645659003115155+AA4133255905590chr2L4936432510356718103574478169,22,53,218,37,37,33,5,5,183,205,258,477,514,551,585,10356718,10356898,10357061,10357115,10357333,10357371,10357409,10357442,
6644481000011-AA41332649243492chr2L4936432510358152103586022408,41,0,408,10358152,10358561,
7144827005949-AA41332757552550chr2L4936432517000030170005288165,55,29,16,61,143,11,9,25,190,246,276,297,359,502,514,17000030,17000196,17000251,17000280,17000299,17000360,17000504,17000519,
714565120031891290-AA41334863520615chr2L493643251700288017004747115,4,27,14,57,24,9,55,60,262,60,20,25,29,56,79,136,167,176,233,293,555,17002880,17002887,17002892,17002920,17002950,17003008,17003044,17003054,17003109,17003170,17004687,
7753982000011-AA41335041717417chr2L4936432525016757250171582184,216,0,184,25016757,25016942,
7795704006221145+AA41334962324620chr2L4936432525521648255222671444,63,28,107,7,241,6,3,26,20,4,8,9,8,24,68,131,160,269,276,517,523,526,557,577,587,599,612,25521648,25521693,25521757,25521785,25521892,25521900,25522142,25522149,25522153,25522189,25522210,25522225,25522240,25522259,
798242200320616+AA41335128517281chr2L493643252792809827928358835,75,57,26,21,15,8,7,17,55,138,195,221,242,266,274,27928098,27928133,27928212,27928270,27928297,27928321,27928342,27928351,
83163320016112706+AA41335266019660chr2L4936432532370994323743351284,187,64,158,34,34,3,30,13,11,7,10,19,103,290,354,512,546,580,583,613,626,637,650,32370994,32371092,32371280,32373272,32374176,32374211,32374246,32374250,32374281,32374295,32374308,32374325,
832511130011518+AA4133535470525chr2L493643253237508732375629730,45,30,171,34,185,29,0,30,75,106,277,311,496,32375087,32375122,32375168,32375198,32375379,32375414,32375600,
86828300000479+AA41335430017300chr2L493643253712739937127761541,7,195,26,14,17,58,65,260,286,37127399,37127516,37127524,37127720,37127747,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.