Schema for xenoRefFlat
  Database: anoGam3    Primary Table: xenoRefFlat    Row Count: 67,288   Data last updated: 2018-07-30
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName LOC106111556varchar(255) values Name of gene as it appears in genome browser.
name NM_001311475varchar(255) values Name of gene
chrom chr2Lvarchar(255) values Reference sequence chromosome or scaffold
strand -char(1) values + or - for strand
txStart 157510int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 158210int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 157510int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 158210int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 3int(10) unsigned range Number of exons
exonStarts 157510,157724,157916,longblob   Exon start positions (or end positions for minus strand item)
exonEnds 157624,157898,158210,longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        anoGam3.xenoMrna.qName (via xenoRefFlat.name)
      anoGam3.xenoRefGene.name (via xenoRefFlat.name)
      anoGam3.xenoRefSeqAli.qName (via xenoRefFlat.name)
      hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
LOC106111556NM_001311475chr2L-1575101582101575101582103157510,157724,157916,157624,157898,158210,
B4GALT7NM_001039911chr3R+35943735359441913594373535944191135943735,35944191,
mthfd2lNM_199813chr2L-1575221581141575221581143157522,157679,157919,157612,157895,158114,
mthfd2NM_001002181chr2L-1575221582461575221582463157522,157676,157859,157621,157829,158246,
MTHFD2LNM_001193907chr2L-1575251582371575251582373157525,157679,157916,157621,157829,158237,
Psma8NM_001108884chr2L+15375627153763321537562715376332215375627,15376194,15376152,15376332,
SPTLC1NM_006415chr3L+318023631813063180236318130633180236,3180699,3181117,3180608,3180999,3181306,
F49D11.12NR_050535chrUn_NW_045231v1+8919549549541891,954,
mthfd2.LNM_001091754chr2L-1575251582971575251582972157525,157676,157621,158297,
mthfd2l.SNM_001093337chr2L-1575251582971575251582972157525,157676,157621,158297,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.