Schema for intronEst
  Database: apiMel1    Primary Table: intronEst    Row Count: 33,905   Data last updated: 2016-06-03
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 356int(10) unsigned range Number of bases that match that aren't repeats
misMatches 0int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 1int(10) unsigned range Number of inserts in target
tBaseInsert 196int(10) unsigned range Number of bases inserted in target
strand +char(2) values + or - for strand. First character query, second target (optional)
qName AB078181varchar(255) values Query sequence name
qSize 544int(10) unsigned range Query sequence size
qStart 97int(10) unsigned range Alignment start position in query
qEnd 453int(10) unsigned range Alignment end position in query
tName Group10.15varchar(255) values Target sequence name
tSize 73892int(10) unsigned range Target sequence size
tStart 10519int(10) unsigned range Alignment start position in target
tEnd 11071int(10) unsigned range Alignment end position in target
blockCount 2int(10) unsigned range Number of blocks in alignment
blockSizes 245,111,longblob   Size of each block
qStarts 97,342,longblob   Start of each block in query.
tStarts 10519,10960,longblob   Start of each block in target.

Connected Tables and Joining Fields
        apiMel1.all_est.qName (via intronEst.qName)
      apiMel1.estOrientInfo.name (via intronEst.qName)
      hgFixed.gbCdnaInfo.acc (via intronEst.qName)
      hgFixed.gbSeq.acc (via intronEst.qName)
      hgFixed.imageClone.acc (via intronEst.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
585356000001196+AB07818154497453Group10.157389210519110712245,111,97,342,10519,10960,
586391000004340+AB07815747752443Group12.10347726249026249757514,7,206,145,19,52,66,73,279,424,249026,249041,249049,249502,249738,
586489000113962-AB07815664453543Group4.145355719246619391759,102,43,208,127,101,111,213,256,464,192466,192475,192667,193440,193790,
587632100003247-AB07817373856689Group4.14535573866683875484139,135,263,96,49,188,323,586,386668,386885,387090,387452,
5875972010041049-AB07816364848648Group4.124145662985433001925266,209,97,17,11,0,266,475,572,589,298543,299423,299973,300071,300181,
5874901021161003+AB07818065475569Group4.62957412864822879788102,38,173,50,83,6,27,14,75,177,215,388,439,522,528,555,286482,286585,286714,287011,287061,287145,287936,287964,
5863860001129923-AB07816047874461Group5.124362492335132438224116,61,34,175,17,133,195,229,233513,235100,235161,243647,
585475101004870-AB07815965253530Group5.1776701812112134595154,187,76,44,16,122,276,463,539,583,12112,12432,13321,13398,13443,
5874640030032311-AB07816877972539Group6.152167388357108359886431,129,141,166,240,271,400,541,357108,357140,358615,359720,
588223000002605-AB07817832152275Group6.22519932502022502850399,60,64,46,145,205,502022,502648,502786,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.