Schema for mrnaOrientInfo
  Database: apiMel1    Primary Table: mrnaOrientInfo    Row Count: 132,241   Data last updated: 2020-08-20
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom Group1.1varchar(255) values Reference sequence chromosome or scaffold
chromStart 94int(10) unsigned range Start position in chromosome
chromEnd 337int(10) unsigned range End position in chromosome
name HP476752varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        apiMel1.all_mrna.qName (via mrnaOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585Group1.194337HP47675200000
585Group1.194337HP47675300000
585Group1.194337HP47675404000
585Group1.194337HP47675504000
585Group1.194474HP537936-14000
585Group1.194621HP46132301000
585Group1.194621HP46132411000
585Group1.194622HP56095800000
585Group1.194622HP560959-10000
585Group1.194724HP54634700000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.