Schema for intronEst
  Database: aplCal1    Primary Table: intronEst    Row Count: 70,749   Data last updated: 2017-07-25
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 159int(10) unsigned range Number of bases that match that aren't repeats
misMatches 2int(10) unsigned range Number of bases that don't match
repMatches 34int(10) unsigned range Number of bases that match but are part of repeats
nCount 5int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 2int(10) unsigned range Number of inserts in target
tBaseInsert 912int(10) unsigned range Number of bases inserted in target
strand +char(2) values + or - for strand. First character query, second target (optional)
qName BF708225varchar(255) values Query sequence name
qSize 304int(10) unsigned range Query sequence size
qStart 104int(10) unsigned range Alignment start position in query
qEnd 304int(10) unsigned range Alignment end position in query
tName scaffold_1000varchar(255) values Target sequence name
tSize 225177int(10) unsigned range Target sequence size
tStart 22530int(10) unsigned range Alignment start position in target
tEnd 23642int(10) unsigned range Alignment end position in target
blockCount 3int(10) unsigned range Number of blocks in alignment
blockSizes 132,15,53,longblob   Size of each block
qStarts 104,236,251,longblob   Start of each block in query.
tStarts 22530,23573,23589,longblob   Start of each block in target.

Connected Tables and Joining Fields
        aplCal1.all_est.qName (via intronEst.qName)
      aplCal1.estOrientInfo.name (via intronEst.qName)
      hgFixed.gbCdnaInfo.acc (via intronEst.qName)
      hgFixed.gbSeq.acc (via intronEst.qName)
      hgFixed.imageClone.acc (via intronEst.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
5851592345002912+BF708225304104304scaffold_100022517722530236423132,15,53,104,236,251,22530,23573,23589,
58524920142621598-BF7081932720271scaffold_10111874441080612669497,50,101,17,1,99,149,255,10806,11671,12551,12652,
5855993001287599-BF7076716140604scaffold_1011187444122517130718931,12,21,10,38,126,188,104,72,10,43,55,76,86,124,250,438,542,122517,123879,123892,123914,123925,125279,126079,128986,130646,
5853624080039639-BF7081605250374scaffold_1023188259917491017624179,106,73,16,151,330,436,509,91749,92406,101672,101746,
73384120221144097+BF7081594690419scaffold_1034212512130268134783583,89,133,98,15,0,83,173,306,404,130268,132923,133805,134669,134768,
733203021244097+BF7082323270327scaffold_1034212512130290134712521,39,89,133,43,0,21,62,151,284,130290,130312,132924,133805,134669,
735726001284676+BF7079286130580scaffold_1034212512130295135549956,90,133,91,5,97,30,44,32,0,56,146,279,370,375,472,504,548,130295,132923,133805,134669,134761,134767,135441,135472,135517,
735416003484677+BF7078335650551scaffold_10342125121303251355491026,90,133,91,5,96,69,5,13,19,0,26,116,249,340,346,442,513,518,532,130325,132923,133805,134669,134761,134768,135441,135511,135517,135530,
586278200001507-BF70838130313293scaffold_10342125121361911369782154,126,10,164,136191,136852,
58658510011846263-BF7075646040604scaffold_1035190002139891146740575,117,168,67,159,0,75,192,378,445,139891,139967,140667,146366,146581,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.