Schema for xenoRefFlat
  Database: bisBis1    Primary Table: xenoRefFlat    Row Count: 468,599   Data last updated: 2017-03-19
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName rbbp7varchar(255) values Name of gene as it appears in genome browser.
name NM_203954varchar(255) values Name of gene
chrom KN265203v1varchar(255) values Reference sequence chromosome or scaffold
strand +char(1) values + or - for strand
txStart 19782908int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 19784162int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 19782911int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 19784162int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 2int(10) unsigned range Number of exons
exonStarts 19782908,19783217,longblob   Exon start positions (or end positions for minus strand item)
exonEnds 19783217,19784162,longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        bisBis1.xenoRefGene.name (via xenoRefFlat.name)
      bisBis1.xenoRefSeqAli.qName (via xenoRefFlat.name)
      hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
rbbp7NM_203954KN265203v1+19782908197841621978291119784162219782908,19783217,19783217,19784162,
Rtn4NM_194053KN264881v1+1271741134972212721171346973291271741,1271943,1272075,1272111,1272280,1272399,1272645,1295867,1330885,1334320,1345557,1346246,1346486,1346930,1347006,1347075, ...1271838,1272066,1272099,1272210,1272290,1272486,1272706,1295924,1331093,1334459,1345625,1346295,1346545,1346973,1347020,1347225, ...
AGOS_AFR446WNM_211348JPYT01113763v1+0222022210,222,
TRMT2BNM_001131134JPYT01142947v1-2403423423421240,342,
SFXN1NM_001322977JPYT01158601v1+80317317317280,293,211,317,
Tcf12NM_001253862JPYT01114467v1+635435435446,99,193,234,31,159,223,354,
Tcf12NM_001253863JPYT01114467v1+635435435446,99,193,234,31,159,223,354,
Tcf12NM_001253864JPYT01114467v1+635435435446,99,193,234,31,159,223,354,
Tcf12NM_001253865JPYT01114467v1+635435435446,99,193,234,31,159,223,354,
Tcf12NM_011544JPYT01114467v1+635435435446,99,193,234,31,159,223,354,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.