Schema for all_mrna
  Database: bosTau2    Primary Table: all_mrna    Row Count: 25,891   Data last updated: 2020-08-20
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 73smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 1250int(10) unsigned range Number of bases that match that aren't repeats
misMatches 0int(10) unsigned range Number of bases that don't match
repMatches 23int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 1int(10) unsigned range Number of inserts in query
qBaseInsert 152int(10) unsigned range Number of bases inserted in query
tNumInsert 5int(10) unsigned range Number of inserts in target
tBaseInsert 99388int(10) unsigned range Number of bases inserted in target
strand +char(2) values + or - for strand. First character query, second target (optional)
qName BC126735varchar(255) values Query sequence name
qSize 1453int(10) unsigned range Query sequence size
qStart 0int(10) unsigned range Alignment start position in query
qEnd 1425int(10) unsigned range Alignment end position in query
tName chr1varchar(255) values Target sequence name
tSize 102834029int(10) unsigned range Target sequence size
tStart 170675int(10) unsigned range Alignment start position in target
tEnd 271336int(10) unsigned range Alignment end position in target
blockCount 6int(10) unsigned range Number of blocks in alignment
blockSizes 264,124,145,81,90,569,longblob   Size of each block
qStarts 0,264,540,685,766,856,longblob   Start of each block in query.
tStarts 170675,224012,246916,257927...longblob   Start of each block in target.

Connected Tables and Joining Fields
        bosTau2.all_est.qName (via all_mrna.qName)
      bosTau2.mgcFullMrna.qName (via all_mrna.qName)
      bosTau2.mgcGenes.name (via all_mrna.qName)
      bosTau2.mrnaOrientInfo.name (via all_mrna.qName)
      bosTau2.refGene.name (via all_mrna.qName)
      bosTau2.refSeqAli.qName (via all_mrna.qName)
      bosTau2.xenoMrna.qName (via all_mrna.qName)
      bosTau2.xenoRefGene.name (via all_mrna.qName)
      bosTau2.xenoRefSeqAli.qName (via all_mrna.qName)
      hgFixed.gbCdnaInfo.acc (via all_mrna.qName)
      hgFixed.gbMiscDiff.acc (via all_mrna.qName)
      hgFixed.gbSeq.acc (via all_mrna.qName)
      hgFixed.gbWarn.acc (via all_mrna.qName)
      hgFixed.imageClone.acc (via all_mrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
73125002301152599388+BC126735145301425chr11028340291706752713366264,124,145,81,90,569,0,264,540,685,766,856,170675,224012,246916,257927,259719,270767,
5871530000000-BC1267351453388541chr11028340292892322893851153,912,289232,
8884130000021032-BC1116584961414chr185650894939778486397799313217,60,136,82,299,359,39778486,39778793,39779795,
73392322330563582361-D856824000164000chr11028340293341644205034066,12,24,11,81,137,109,40,31,18,16,5,13,25,144,70,67,72,163,79,216,118,157,159,193,141,85,192,24,157,153,82,170,97,62,84,226,268 ...0,67,79,103,114,195,332,441,481,512,531,548,553,568,593,737,808,875,947,1110,1189,1405,1523,1680,1839,2032,2173,2258,2450,2474,2 ...334164,334230,337044,341095,341108,341191,341591,344907,344948,345111,345129,345145,348269,348283,348869,350161,350231,350299,35 ...
70376900000631836-BC1096707851770chr57642664415467210154998157172,164,85,64,160,75,49,15,187,351,436,500,660,735,15467210,15483760,15491093,15492706,15498175,15498955,15499766,
7032163228000339012+BC119931221802193chr5764266441551381115555016463,247,141,1742,0,63,310,451,15513811,15551899,15552328,15553274,
73138200000271206-BC122836139911383chr11028340296266836992713840,143,399,16,856,999,626683,628656,698872,
5933110111600131525251+L06320328403284chr1102834029106781610963481634,83,136,121,182,158,142,115,200,158,151,146,929,4,527,195,0,34,117,253,374,556,714,856,971,1171,1329,1480,1626,2555,2559,3089,1067816,1067851,1067938,1073951,1081542,1083989,1084253,1085932,1088865,1089173,1092671,1093313,1094686,1095616,1095621,1096153,
593306201680001025239+X68443323003230chr11028340291067880109634911194,121,182,158,142,115,200,158,151,146,1663,0,194,315,497,655,797,912,1112,1270,1421,1567,1067880,1073951,1081542,1083989,1084253,1085932,1088865,1089173,1092671,1093313,1094686,
59385600000412853+AY48811992165921chr1102834029116483611785455209,146,160,158,183,65,274,420,580,738,1164836,1169280,1173456,1174319,1178362,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.