Schema for xenoRefFlat
  Database: bosTau4    Primary Table: xenoRefFlat    Row Count: 321,099   Data last updated: 2020-08-20
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName E4f1varchar(255) values Name of gene as it appears in genome browser.
name NM_007893varchar(255) values Name of gene
chrom chr25varchar(255) values Reference sequence chromosome or scaffold
strand +char(1) values + or - for strand
txStart 2260745int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 2269997int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 2260816int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 2269997int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 16int(10) unsigned range Number of exons
exonStarts 2260745,2260933,2263236,226...longblob   Exon start positions (or end positions for minus strand item)
exonEnds 2260888,2260973,2263367,226...longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        bosTau4.xenoMrna.qName (via xenoRefFlat.name)
      bosTau4.xenoRefGene.name (via xenoRefFlat.name)
      bosTau4.xenoRefSeqAli.qName (via xenoRefFlat.name)
      hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
E4f1NM_007893chr25+2260745226999722608162269997162260745,2260933,2263236,2264376,2266745,2266854,2267034,2267265,2267508,2268007,2268447,2268670,2269016,2269287,2269499,2269640,2260888,2260973,2263367,2264455,2266825,2266939,2267155,2267418,2267675,2268202,2268549,2268887,2269215,2269430,2269562,2269997,
SOX5NM_006940chr5+926702479308980692670247930850863792670247,92730790,92827317,92839317,92844342,92930952,92960370,92997796,93035773,93048454,93072763,93075402,93082557,93084782,93 ...92670486,92731001,92827404,92839488,92844413,92931073,92960456,92997943,93035951,93048600,93072872,93075576,93082774,93085558,93 ...
TNNI2NM_003282chrUn.004.8819-647181666118165647,868,1320,1554,1774,757,1045,1410,1683,1816,
Stac3NM_177707chr5+607045656071067260705131607103111760704565,60704640,60704696,60705131,60705763,60705926,60706268,60706580,60707518,60708946,60709018,60709190,60709502,60709771,60 ...60704607,60704670,60704713,60705152,60705890,60706032,60706366,60706637,60707611,60709014,60709022,60709237,60709587,60709823,60 ...
RIMKLBNM_020734chr5-10852093310856095510852442410854542837108520933,108521369,108521508,108521682,108521818,108521873,108521922,108522132,108522373,108522417,108522573,108522852,10852291 ...108521265,108521455,108521626,108521705,108521828,108521894,108521944,108522209,108522402,108522562,108522763,108522897,10852295 ...
LOC100134871NM_001113223chr15+47800378478271944780038447827179347800378,47800593,47827050,47800476,47800816,47827194,
LOC100134871NM_001113223chr15+47825925478718564782592547871856347825925,47871726,47871769,47826148,47871741,47871856,
LOC100134871NM_001113223chr15+47886158478872154788615847887091347886158,47886962,47887194,47886383,47887091,47887215,
tnip1NM_001079952chr7-61915999619405416191599961940541861915999,61920000,61922421,61922702,61923658,61932758,61939073,61940499,61916110,61920122,61922541,61922765,61923670,61932938,61939190,61940541,
CASP1NM_033293chr15+208097120948522080971209483962080971,2088133,2088760,2089426,2094179,2094740,2081004,2088307,2088982,2089562,2094289,2094852,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.