Schema for xenoMrna
  Database: bosTau7    Primary Table: xenoMrna    Row Count: 6,828,406   Data last updated: 2020-08-20
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 38int(10) unsigned Number of bases that match that aren't repeats
misMatches 4int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 0int(10) unsigned Number of inserts in query
qBaseInsert 0int(10) unsigned Number of bases inserted in query
tNumInsert 0int(10) unsigned Number of inserts in target
tBaseInsert 0int(10) unsigned Number of bases inserted in target
strand ++char(2) + or - for strand. First character query, second target (optional)
qName LE371241varchar(255) Query sequence name
qSize 251int(10) unsigned Query sequence size
qStart 7int(10) unsigned Alignment start position in query
qEnd 49int(10) unsigned Alignment end position in query
tName chr1varchar(255) Target sequence name
tSize 161428367int(10) unsigned Target sequence size
tStart 76int(10) unsigned Alignment start position in target
tEnd 118int(10) unsigned Alignment end position in target
blockCount 1int(10) unsigned Number of blocks in alignment
blockSizes 42,longblob Size of each block
qStarts 7,longblob Start of each block in query.
tStarts 76,longblob Start of each block in target.

Connected Tables and Joining Fields
        bosTau7.all_est.qName (via xenoMrna.qName)
      bosTau7.all_mrna.qName (via xenoMrna.qName)
      bosTau7.refGene.name (via xenoMrna.qName)
      bosTau7.refSeqAli.qName (via xenoMrna.qName)
      bosTau7.xenoRefFlat.name (via xenoMrna.qName)
      bosTau7.xenoRefGene.name (via xenoMrna.qName)
      bosTau7.xenoRefSeqAli.qName (via xenoMrna.qName)
      hgFixed.gbCdnaInfo.acc (via xenoMrna.qName)
      hgFixed.gbMiscDiff.acc (via xenoMrna.qName)
      hgFixed.gbSeq.acc (via xenoMrna.qName)
      hgFixed.gbWarn.acc (via xenoMrna.qName)
      hgFixed.imageClone.acc (via xenoMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
585384000000++LE371241251749chr116142836776118142,7,76,
58582220000563294+-HE849927603259363chr1161428367434867746622,15,4,18,3,42,259,281,296,300,318,321,161360621,161360653,161360689,161360728,161360793,161423977,
5855730015731703++KM66223831852169chr116142836774569219415,15,6,24,52,124,139,145,7456,7517,8749,9195,
5854220000123752++JP39523026678122chr1161428367754431340224,20,78,102,7544,31320,
5856922350013113947++BC131999101219949chr116142836727286421603666,77,184,19,688,765,27286,27952,41976,
5856932340013113947++BC132001100919949chr116142836727286421603666,77,184,19,688,765,27286,27952,41976,
183289330043892180585+-JV67436889755766chr4123809850116103562116284469539,42,184,33,24,55,137,481,707,742,7525381,7525748,7706047,7706231,7706264,
1419399000000++L77718902775chr4123809850109414143109414191148,27,109414143,
14191453200115359644++DQ0817191975197chr4123809850109378054109437875475,45,3,54,5,95,140,143,109378054,109434671,109434719,109437821,
14198117002238236376++AY69092039354390chr4123809850109377844109414318339,27,32,54,313,358,109377844,109378103,109414286,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.