Schema for mrnaOrientInfo
  Database: bosTau9    Primary Table: mrnaOrientInfo    Row Count: 35,770   Data last updated: 2019-05-21
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 589smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 626200int(10) unsigned range Start position in chromosome
chromEnd 654495int(10) unsigned range End position in chromosome
name BC114143varchar(255) values Accession of EST
intronOrientation 1smallint(6) range Orientation of introns with respect to EST
sizePolyA 164smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 189smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        bosTau9.all_mrna.qName (via mrnaOrientInfo.name)
      bosTau9.refFlat.name (via mrnaOrientInfo.name)
      bosTau9.refGene.name (via mrnaOrientInfo.name)
      bosTau9.refSeqAli.qName (via mrnaOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
589chr1626200654495BC114143116401890
592chr19910221002224BC1031853680940
592chr19910411002222BT030515300240
592chr110405221047018BC1128732112000
593chr110991241100143BC110185016000
593chr111028781118312BC1461343160410
593chr111239401131748BC1116621140360
74chr113908141455166BC1029782240470
595chr114304021431031S7287700000
597chr116436791651038M18753600230

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.