Schema for all_mrna
  Database: braFlo1    Primary Table: all_mrna    Row Count: 719   Data last updated: 2020-08-20
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 593smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 649int(10) unsigned range Number of bases that match that aren't repeats
misMatches 6int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 4int(10) unsigned range Number of inserts in target
tBaseInsert 28250int(10) unsigned range Number of bases inserted in target
strand -char(2) values + or - for strand. First character query, second target (optional)
qName EF157660varchar(255) values Query sequence name
qSize 657int(10) unsigned range Query sequence size
qStart 2int(10) unsigned range Alignment start position in query
qEnd 657int(10) unsigned range Alignment end position in query
tName chrUnvarchar(255) values Target sequence name
tSize 926371504int(10) unsigned range Target sequence size
tStart 1141692int(10) unsigned range Alignment start position in target
tEnd 1170597int(10) unsigned range Alignment end position in target
blockCount 5int(10) unsigned range Number of blocks in alignment
blockSizes 181,131,97,152,94,longblob   Size of each block
qStarts 0,181,312,409,561,longblob   Start of each block in query.
tStarts 1141692,1168853,1169400,116...longblob   Start of each block in target.

Connected Tables and Joining Fields
        braFlo1.all_est.qName (via all_mrna.qName)
      braFlo1.mrnaOrientInfo.name (via all_mrna.qName)
      braFlo1.xenoMrna.qName (via all_mrna.qName)
      braFlo1.xenoRefGene.name (via all_mrna.qName)
      braFlo1.xenoRefSeqAli.qName (via all_mrna.qName)
      hgFixed.gbCdnaInfo.acc (via all_mrna.qName)
      hgFixed.gbMiscDiff.acc (via all_mrna.qName)
      hgFixed.gbSeq.acc (via all_mrna.qName)
      hgFixed.gbWarn.acc (via all_mrna.qName)
      hgFixed.imageClone.acc (via all_mrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
59364960000428250-EF1576606572657chrUn926371504114169211705975181,131,97,152,94,0,181,312,409,561,1141692,1168853,1169400,1169620,1170503,
5936487000041156+EF1576606572657chrUn92637150411509101152721594,149,100,131,181,2,96,245,345,476,1150910,1151265,1151694,1152031,1152540,
59892127001763845-HM0489369550955chrUn92637150418185271823320713,185,211,152,94,131,162,0,13,198,409,561,662,793,1818527,1819062,1820496,1821177,1821750,1822606,1823158,
59890042000053316-HM0489399570942chrUn926371504181906218233206185,211,152,91,141,162,15,200,411,563,654,795,1819062,1820496,1821177,1821750,1822596,1823158,
393285549005112810642-AJ133836103801016chrUn92637150443871700243872854812112,38,37,31,120,30,5,40,123,135,152,81,22,142,276,314,351,471,501,507,547,670,805,957,438717002,438717116,438717154,438717191,438723866,438723987,438724018,438724023,438724368,438724768,438725367,438728467,
87115017146100816680+AJ245429131501314chrUn92637150414930917149489119328,167,61,96,204,126,209,86,37,0,328,495,556,652,856,982,1191,1277,14930917,14933395,14945483,14946073,14946638,14947486,14948038,14948506,14948874,
4133871000000-AJ1338361038759847chrUn926371504465106788465106876188,191,465106788,
532108766002318208344+EU049593118831187chrUn92637150448208743348229693010139,34,8,21,120,553,6,39,62,171,3,142,176,184,205,331,884,890,954,1016,482087433,482087957,482111506,482112518,482112795,482112915,482115057,482296632,482296696,482296759,
77622864592141424-DQ6445402468102448chrUn9263715042511459425117022749,46,1349,23,765,159,33,20,69,115,1471,1496,2264,2425,25114594,25114644,25114693,25116042,25116065,25116830,25116989,
98133232330113157865+AF3032161409111409chrUn92637150426746604269058665546,167,144,341,199,11,557,724,869,1210,26746604,26904543,26905177,26905321,26905667,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.