Schema for estOrientInfo
  Database: braFlo1    Primary Table: estOrientInfo    Row Count: 498,730   Data last updated: 2016-12-12
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 1551smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chrUnvarchar(255) values Reference sequence chromosome or scaffold
chromStart 126662600int(10) unsigned range Start position in chromosome
chromEnd 126663679int(10) unsigned range End position in chromosome
name AI391435varchar(255) values Accession of EST
intronOrientation 1smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        braFlo1.all_est.qName (via estOrientInfo.name)
      braFlo1.intronEst.qName (via estOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
1551chrUn126662600126663679AI39143510000
1551chrUn126676869126678273AI39143720000
4452chrUn506904169506906468AI39143720000
15959chrUn864783296864783990AI39143400000
585chrM12540BI38601300000
585chrM12629BI38678500000
585chrM17532BI38760800000
585chrM20495BI38854900000
585chrM20606BI38706600000
585chrM20662BI37981100000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.