Schema for xenoRefFlat
  Database: braFlo1    Primary Table: xenoRefFlat    Row Count: 395,369   Data last updated: 2020-08-20
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName TMEM209varchar(255) values Name of gene as it appears in genome browser.
name NM_032842varchar(255) values Name of gene
chrom chrUnvarchar(255) values Reference sequence chromosome or scaffold
strand -char(1) values + or - for strand
txStart 642142694int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 642143724int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 642142694int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 642143724int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 3int(10) unsigned range Number of exons
exonStarts 642142694,642143244,642143625,longblob   Exon start positions (or end positions for minus strand item)
exonEnds 642142709,642143349,642143724,longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        braFlo1.xenoMrna.qName (via xenoRefFlat.name)
      braFlo1.xenoRefGene.name (via xenoRefFlat.name)
      braFlo1.xenoRefSeqAli.qName (via xenoRefFlat.name)
      hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
TMEM209NM_032842chrUn-6421426946421437246421426946421437243642142694,642143244,642143625,642142709,642143349,642143724,
SLC38A9NM_001258286chrUn-1224361801224390261224361801224390263122436180,122437323,122438975,122436267,122437443,122439026,
AtFH16; FH16; formin homolog 16; MBK20.23;NM_001203322chrUn-30942285309424253094228530942425230942285,30942376,30942334,30942425,
T4P13.15; T4P13_15NM_110981chrUn+8938475028938489748938475028938489743893847502,893848624,893848946,893847520,893848758,893848974,
MSH2NM_001258281chrUn-27910594727912618427910594727912618421279105947,279106475,279106865,279106951,279107448,279108054,279108074,279109459,279110393,279110408,279111469,279114709,27912110 ...279105986,279106518,279106867,279107017,279107601,279108057,279108167,279109625,279110397,279110472,279111529,279114808,27912118 ...
ANKRD11NM_001256183chrUn+98808602988232159880860298823215798808602,98813176,98819029,98819046,98819056,98822990,98823155,98808659,98813321,98819046,98819054,98819061,98823128,98823215,
ANKRD11NM_001256182chrUn+98808602988232159880860298823215798808602,98813176,98819029,98819046,98819056,98822990,98823155,98808659,98813321,98819046,98819054,98819061,98823128,98823215,
ANKRD11NM_001256182chrUn+6396563446396752456396563446396752457639656344,639658808,639661755,639673159,639673324,639675115,639675191,639656401,639658957,639661895,639673297,639673384,639675181,639675245,
Zfp748NM_001035231chrUn+4104487924104493354104487924104493352410448792,410449302,410448891,410449335,
Kcnq2NM_001003824chrUn+4739361494739542304739361494739542305473936149,473938887,473940164,473946897,473954122,473936302,473938998,473940221,473946911,473954230,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.