Schema for estOrientInfo
  Database: caeRem3    Primary Table: estOrientInfo    Row Count: 21,168   Data last updated: 2016-05-28
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 863smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chrUnvarchar(255) values Reference sequence chromosome or scaffold
chromStart 36561036int(10) unsigned range Start position in chromosome
chromEnd 36561350int(10) unsigned range End position in chromosome
name DN911454varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        caeRem3.all_est.qName (via estOrientInfo.name)
      caeRem3.intronEst.qName (via estOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
863chrUn3656103636561350DN91145400000
1152chrUn7436277574364858DN95621320100
1414chrUn108762633108763126DN172779000160
585chrUn902910436DR40932433000
585chrUn2675227703DR77915440000
585chrUn5994260692DR77979700000
585chrUn123319124036DR40711210000
586chrUn134434135579DR78147550000
586chrUn143113143832DR778199100240
586chrUn160387161624DR77779521000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.