Schema for intronEst
  Database: calMil1    Primary Table: intronEst    Row Count: 58,570   Data last updated: 2016-04-10
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 644int(10) unsigned range Number of bases that match that aren't repeats
misMatches 1int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 2int(10) unsigned range Number of inserts in target
tBaseInsert 2134int(10) unsigned range Number of bases inserted in target
strand +char(2) values + or - for strand. First character query, second target (optional)
qName JK953043varchar(255) values Query sequence name
qSize 645int(10) unsigned range Query sequence size
qStart 0int(10) unsigned range Alignment start position in query
qEnd 645int(10) unsigned range Alignment end position in query
tName AAVX02040487varchar(255) values Target sequence name
tSize 63407int(10) unsigned range Target sequence size
tStart 51985int(10) unsigned range Alignment start position in target
tEnd 54764int(10) unsigned range Alignment end position in target
blockCount 3int(10) unsigned range Number of blocks in alignment
blockSizes 90,104,451,longblob   Size of each block
qStarts 0,90,194,longblob   Start of each block in query.
tStarts 51985,53721,54313,longblob   Start of each block in target.

Connected Tables and Joining Fields
        calMil1.all_est.qName (via intronEst.qName)
      calMil1.estOrientInfo.name (via intronEst.qName)
      hgFixed.gbCdnaInfo.acc (via intronEst.qName)
      hgFixed.gbSeq.acc (via intronEst.qName)
      hgFixed.imageClone.acc (via intronEst.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
5856441000022134+JK9530436450645AAVX02040487634075198554764390,104,451,0,90,194,51985,53721,54313,
5856472000022134+JK9628166490649AAVX02040487634075203454817341,104,504,0,41,145,52034,53721,54313,
5857015000011959-JK9491687060706AAVX020411974768226179288442667,39,0,667,26179,28805,
585696200001655-JK9459326980698AAVX020411974768228829301822157,541,0,157,28829,29641,
585761100001784-JK9450347620762AAVX020411974768229777313232392,370,0,392,29777,30953,
5857002000023434-JK8716767031703AAVX020411974768230044341803125,459,118,0,125,584,30044,30953,34062,
5854216000031250-JK9421917500427AAVX020415214063636763384404113,155,123,36,323,436,591,714,36763,37304,37555,38404,
5854395001131250-JK9552107660445AAVX020415214063636763384575113,155,123,30,23,321,434,589,712,743,36763,37304,37555,38404,38434,
5855335000031250-JK96159763919557AAVX020415214063636763385514113,155,123,147,82,195,350,473,36763,37304,37555,38404,
5856329000042574-JK955803763122763AAVX020415214063636775399905101,155,123,144,118,0,101,256,379,523,36775,37304,37555,38404,39872,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.