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Database: canFam1 Primary Table: xenoMrna Row Count: 6,535,821   Data last updated: 2016-02-16
On download server: MariaDB table dump directory
field | example | SQL type |
bin | 9 | smallint(5) unsigned |
matches | 1300 | int(10) unsigned |
misMatches | 108 | int(10) unsigned |
repMatches | 0 | int(10) unsigned |
nCount | 0 | int(10) unsigned |
qNumInsert | 16 | int(10) unsigned |
qBaseInsert | 606 | int(10) unsigned |
tNumInsert | 11 | int(10) unsigned |
tBaseInsert | 137697 | int(10) unsigned |
strand | ++ | char(2) |
qName | AK055938 | varchar(255) |
qSize | 2185 | int(10) unsigned |
qStart | 164 | int(10) unsigned |
qEnd | 2178 | int(10) unsigned |
tName | chr1 | varchar(255) |
tSize | 124897793 | int(10) unsigned |
tStart | 3094723 | int(10) unsigned |
tEnd | 3233828 | int(10) unsigned |
blockCount | 19 | int(10) unsigned |
blockSizes | 24,276,19,65,45,111,42,63,3... | longblob |
qStarts | 164,659,936,961,1038,1083,1... | longblob |
tStarts | 3094723,3232082,3232358,323... | longblob |
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Connected Tables and Joining Fields
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Sample Rows
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bin | matches | misMatches | repMatches | nCount | qNumInsert | qBaseInsert | tNumInsert | tBaseInsert | strand | qName | qSize | qStart | qEnd | tName | tSize | tStart | tEnd | blockCount | blockSizes | qStarts | tStarts |
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9 | 1300 | 108 | 0 | 0 | 16 | 606 | 11 | 137697 | ++ | AK055938 | 2185 | 164 | 2178 | chr1 | 124897793 | 3094723 | 3233828 | 19 | 24,276,19,65,45,111,42,63,32,108,58,138,94,94,58,54,45,10,72, | 164,659,936,961,1038,1083,1196,1242,1325,1364,1477,1555,1698,1822,1917,1976,2034,2079,2106, | 3094723,3232082,3232358,3232377,3232447,3232493,3232610,3232652,3232733,3232765,3233087,3233178,3233316,3233465,3233559,3233617, ... |
9 | 2421 | 300 | 0 | 22 | 8 | 395 | 27 | 67374 | +- | BC033008 | 3241 | 55 | 3193 | chr1 | 124897793 | 3116414 | 3186531 | 28 | 111,73,117,131,56,98,80,120,110,66,73,109,136,133,70,88,170,75,87,130,79,138,156,171,12,52,43,59, | 55,166,239,356,487,543,641,721,841,951,1017,1090,1199,1358,1491,1561,1649,1853,1938,2025,2157,2236,2376,2532,2834,2937,2989,3134 ... | 121711262,121743456,121745299,121746235,121747243,121749243,121751239,121752327,121753512,121754523,121754899,121757190,12175952 ... |
9 | 2429 | 303 | 0 | 22 | 7 | 385 | 26 | 67363 | +- | BC059375 | 3488 | 149 | 3288 | chr1 | 124897793 | 3116414 | 3186531 | 27 | 111,73,117,131,56,98,80,120,110,66,73,109,136,133,70,88,170,173,130,79,138,156,171,12,52,43,59, | 149,260,333,450,581,637,735,815,935,1045,1111,1184,1293,1452,1585,1655,1743,1947,2120,2252,2331,2471,2627,2929,3032,3084,3229, | 121711262,121743456,121745299,121746235,121747243,121749243,121751239,121752327,121753512,121754523,121754899,121757190,12175952 ... |
9 | 2429 | 303 | 0 | 22 | 7 | 385 | 26 | 67363 | +- | D12485 | 3493 | 145 | 3284 | chr1 | 124897793 | 3116414 | 3186531 | 27 | 111,73,117,131,56,98,80,120,110,66,73,109,136,133,70,88,170,173,130,79,138,156,171,12,52,43,59, | 145,256,329,446,577,633,731,811,931,1041,1107,1180,1289,1448,1581,1651,1739,1943,2116,2248,2327,2467,2623,2925,3028,3080,3225, | 121711262,121743456,121745299,121746235,121747243,121749243,121751239,121752327,121753512,121754523,121754899,121757190,12175952 ... |
9 | 2429 | 303 | 0 | 22 | 7 | 385 | 26 | 67363 | +- | M57736 | 3486 | 136 | 3275 | chr1 | 124897793 | 3116414 | 3186531 | 27 | 111,73,117,131,56,98,80,120,110,66,73,109,136,133,70,88,170,173,130,79,138,156,171,12,52,43,59, | 136,247,320,437,568,624,722,802,922,1032,1098,1171,1280,1439,1572,1642,1730,1934,2107,2239,2318,2458,2614,2916,3019,3071,3216, | 121711262,121743456,121745299,121746235,121747243,121749243,121751239,121752327,121753512,121754523,121754899,121757190,12175952 ... |
608 | 1556 | 211 | 0 | 0 | 7 | 158 | 15 | 22200 | +- | AK230988 | 2083 | 1 | 1926 | chr1 | 124897793 | 3116601 | 3140568 | 18 | 74,136,133,70,88,170,51,155,131,81,133,163,165,66,26,21,39,65, | 1,75,234,367,437,525,696,747,902,1083,1164,1297,1460,1625,1710,1742,1765,1861, | 121757225,121759526,121762606,121764087,121764884,121766594,121767594,121769572,121771287,121776010,121776923,121778624,12178069 ... |
9 | 2511 | 287 | 0 | 22 | 6 | 108 | 26 | 67094 | +- | DQ846654 | 2985 | 0 | 2928 | chr1 | 124897793 | 3116601 | 3186515 | 29 | 95,73,117,131,56,98,80,120,110,66,73,109,136,133,70,88,170,51,155,130,81,133,163,165,66,26,21,39,65, | 0,95,168,285,416,472,570,650,770,880,946,1019,1128,1287,1420,1490,1578,1749,1800,1955,2085,2166,2299,2462,2627,2712,2744,2767,28 ... | 121711278,121743456,121745299,121746235,121747243,121749243,121751239,121752327,121753512,121754523,121754899,121757190,12175952 ... |
9 | 1621 | 375 | 0 | 29 | 3 | 99 | 21 | 29562 | +- | AK041894 | 2486 | 3 | 2127 | chr1 | 124897793 | 3116896 | 3148483 | 22 | 31,3,77,119,113,64,71,111,132,32,128,70,88,122,27,123,131,80,133,160,3,207, | 3,34,37,114,233,346,410,481,592,724,756,884,954,1042,1224,1278,1413,1544,1624,1757,1917,1920, | 121749310,121749458,121751242,121752327,121753511,121754525,121754899,121757188,121759526,121761426,121762611,121764087,12176488 ... |
9 | 2024 | 468 | 0 | 51 | 5 | 107 | 25 | 67089 | +- | AK164619 | 3065 | 86 | 2736 | chr1 | 124897793 | 3116896 | 3186528 | 26 | 108,73,116,117,63,96,82,119,113,64,45,111,132,32,128,70,88,122,27,123,131,80,133,160,3,207, | 86,194,267,389,508,571,667,749,868,981,1045,1090,1201,1333,1365,1493,1563,1651,1833,1887,2022,2153,2233,2366,2526,2529, | 121711265,121743456,121745299,121746240,121747236,121749243,121751237,121752327,121753511,121754525,121754925,121757188,12175952 ... |
9 | 2057 | 473 | 0 | 51 | 4 | 95 | 25 | 67051 | +- | AK088857 | 3096 | 85 | 2761 | chr1 | 124897793 | 3116896 | 3186528 | 26 | 108,73,116,117,63,96,82,119,113,64,71,111,132,32,128,70,88,122,27,135,131,80,133,160,3,207, | 85,193,266,388,507,570,666,748,867,980,1044,1115,1226,1358,1390,1518,1588,1676,1858,1912,2047,2178,2258,2391,2551,2554, | 121711265,121743456,121745299,121746240,121747236,121749243,121751237,121752327,121753511,121754525,121754899,121757188,12175952 ... |
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Note: all start coordinates in our database are 0-based, not
1-based. See explanation
here.
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