Schema for xenoMrna
  Database: canFam2    Primary Table: xenoMrna    Row Count: 7,080,466   Data last updated: 2020-08-20
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 609smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 224int(10) unsigned Number of bases that match that aren't repeats
misMatches 37int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 2int(10) unsigned Number of inserts in query
qBaseInsert 108int(10) unsigned Number of bases inserted in query
tNumInsert 2int(10) unsigned Number of inserts in target
tBaseInsert 102int(10) unsigned Number of bases inserted in target
strand +-char(2) + or - for strand. First character query, second target (optional)
qName EZ481662varchar(255) Query sequence name
qSize 388int(10) unsigned Query sequence size
qStart 0int(10) unsigned Alignment start position in query
qEnd 369int(10) unsigned Alignment end position in query
tName chr1varchar(255) Target sequence name
tSize 125616256int(10) unsigned Target sequence size
tStart 3248276int(10) unsigned Alignment start position in target
tEnd 3248639int(10) unsigned Alignment end position in target
blockCount 3int(10) unsigned Number of blocks in alignment
blockSizes 39,165,57,longblob Size of each block
qStarts 0,81,312,longblob Start of each block in query.
tStarts 122367617,122367692,122367923,longblob Start of each block in target.

Connected Tables and Joining Fields
        canFam2.all_est.qName (via xenoMrna.qName)
      canFam2.all_mrna.qName (via xenoMrna.qName)
      canFam2.refGene.name (via xenoMrna.qName)
      canFam2.refSeqAli.qName (via xenoMrna.qName)
      canFam2.xenoRefFlat.name (via xenoMrna.qName)
      canFam2.xenoRefGene.name (via xenoMrna.qName)
      canFam2.xenoRefSeqAli.qName (via xenoMrna.qName)
      hgFixed.gbCdnaInfo.acc (via xenoMrna.qName)
      hgFixed.gbMiscDiff.acc (via xenoMrna.qName)
      hgFixed.gbSeq.acc (via xenoMrna.qName)
      hgFixed.gbWarn.acc (via xenoMrna.qName)
      hgFixed.imageClone.acc (via xenoMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
609224370021082102+-EZ4816623880369chr112561625632482763248639339,165,57,0,81,312,122367617,122367692,122367923,
609240340041084319+-EZ46241942022404chr112561625632486633249256627,69,21,80,41,36,22,126,219,240,323,368,122367000,122367097,122367408,122367435,122367515,122367557,
6091071900232232+-EZ46364826940198chr112561625632509383251096354,27,45,40,106,153,122365160,122365225,122365273,
6091342100245254+-EZ4834332062202chr112561625632512593251468335,27,93,2,48,109,122364788,122364836,122364904,
76240828702272602867193+-BC0330083241543031chr11256162563251640332155029112,73,117,131,56,99,4,75,120,110,66,73,109,136,133,70,88,170,51,56,88,129,81,138,156,171,12,51,42,54,166,239,356,487,543,642,646,721,841,951,1017,1090,1199,1358,1491,1561,1649,1820,1871,1937,2025,2155,2236,2376,2532,2834,2938, ...122294706,122326901,122328744,122329680,122330688,122332688,122332892,122334679,122335758,122336943,122337954,122338330,12234062 ...
76241529102262502767182+-BC05937534881483126chr11256162563251640332155028112,73,117,131,56,99,4,75,120,110,66,73,109,136,133,70,88,170,51,155,129,81,138,156,171,12,51,42,148,260,333,450,581,637,736,740,815,935,1045,1111,1184,1293,1452,1585,1655,1743,1914,1965,2120,2250,2331,2471,2627,2929,3033,308 ...122294706,122326901,122328744,122329680,122330688,122332688,122332892,122334679,122335758,122336943,122337954,122338330,12234062 ...
76241529102262502767182+-D1248534931443122chr11256162563251640332155028112,73,117,131,56,99,4,75,120,110,66,73,109,136,133,70,88,170,51,155,129,81,138,156,171,12,51,42,144,256,329,446,577,633,732,736,811,931,1041,1107,1180,1289,1448,1581,1651,1739,1910,1961,2116,2246,2327,2467,2623,2925,3029,308 ...122294706,122326901,122328744,122329680,122330688,122332688,122332892,122334679,122335758,122336943,122337954,122338330,12234062 ...
76241529102262502767182+-M5773634861353113chr11256162563251640332155028112,73,117,131,56,99,4,75,120,110,66,73,109,136,133,70,88,170,51,155,129,81,138,156,171,12,51,42,135,247,320,437,568,624,723,727,802,922,1032,1098,1171,1280,1439,1572,1642,1730,1901,1952,2107,2237,2318,2458,2614,2916,3020,307 ...122294706,122326901,122328744,122329680,122330688,122332688,122332892,122334679,122335758,122336943,122337954,122338330,12234062 ...
60914151730043381322344+-AK230988208301926chr1125616256325166932756011475,136,133,70,88,170,157,131,82,133,163,171,14,65,0,75,234,367,437,525,745,902,1082,1164,1297,1460,1847,1861,122340655,122342951,122346031,122347512,122348309,122350019,122352967,122354684,122359404,122360318,122362019,122364085,12236450 ...
76236725002232892567225+-DQ846654298502928chr1125616256325166933215332695,73,117,131,56,99,3,76,120,110,66,73,109,136,133,70,88,170,157,130,81,133,163,171,14,65,0,95,168,285,416,472,571,574,650,770,880,946,1019,1128,1287,1420,1490,1578,1798,1955,2085,2166,2299,2462,2849,2863,122294723,122326901,122328744,122329680,122330688,122332688,122332944,122334678,122335758,122336943,122337954,122338330,12234062 ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.