Schema for mrnaOrientInfo
  Database: canFam3    Primary Table: mrnaOrientInfo    Row Count: 5,990   Data last updated: 2020-08-20
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 623smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 5070924int(10) unsigned range Start position in chromosome
chromEnd 5106668int(10) unsigned range End position in chromosome
name HM154531varchar(255) values Accession of EST
intronOrientation 4smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        canFam3.all_mrna.qName (via mrnaOrientInfo.name)
      canFam3.refFlat.name (via mrnaOrientInfo.name)
      canFam3.refGene.name (via mrnaOrientInfo.name)
      canFam3.refSeqAli.qName (via mrnaOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
623chr150709245106668HM15453140000
86chr11373384813900653AB154172217000
86chr11373450313900450AY50956310000
86chr11373474213900653AB116145117000
710chr11646979216472910DQ44907210000
92chr12006078720417367X51448170000
776chr12511988925119920AB02205801000
97chr12567803825700302U396635160370
791chr12708744627087597AF31741600000
825chr13152323431523265HV34750300079

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.