Schema for xenoRefFlat
  Database: canFam3    Primary Table: xenoRefFlat    Row Count: 277,690   Data last updated: 2020-08-20
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName ZNF629varchar(255) values Name of gene as it appears in genome browser.
name NM_001206206varchar(255) values Name of gene
chrom chr6varchar(255) values Reference sequence chromosome or scaffold
strand +char(1) values + or - for strand
txStart 17371731int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 17396302int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 17393005int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 17395541int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 3int(10) unsigned range Number of exons
exonStarts 17371731,17393005,17396135,longblob   Exon start positions (or end positions for minus strand item)
exonEnds 17371848,17396087,17396302,longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        canFam3.xenoMrna.qName (via xenoRefFlat.name)
      canFam3.xenoRefGene.name (via xenoRefFlat.name)
      canFam3.xenoRefSeqAli.qName (via xenoRefFlat.name)
      hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
ZNF629NM_001206206chr6+17371731173963021739300517395541317371731,17393005,17396135,17371848,17396087,17396302,
DYNC2I2NM_001206205chr9+549300535495374054930053549536341154930053,54942951,54950084,54950713,54951469,54952107,54952142,54952525,54952989,54953395,54953725,54930239,54943200,54950194,54950871,54951579,54952116,54952301,54952758,54953147,54953663,54953740,
Ndufb10NM_001109443chr6+70101912701020687010191270102068170101912,70102068,
Ndufb10NM_001109443chr7+69705018697055486970502669705548169705018,69705548,
CTNNA1NM_001035366chr11+263077762645949726307781264587132226307776,26309115,26334335,26335009,26343531,26346276,26409125,26410425,26430548,26443749,26451904,26452668,26455484,26456586,26 ...26307886,26309311,26334505,26335126,26343801,26346480,26409206,26410578,26430641,26443906,26452105,26452820,26455595,26456768,26 ...
b4galnt1.LNM_001086143chr10-170429717083151704297170831571704297,1704871,1705038,1705336,1705874,1707530,1708222,1704388,1705026,1705110,1705477,1706060,1707662,1708315,
sos1NM_001082993chr8-266381362669881826638136266988181026638136,26650166,26652993,26654160,26657897,26658211,26659783,26694577,26695664,26698689,26638175,26650280,26653154,26654266,26658060,26658339,26659831,26694745,26695796,26698818,
smad9.LNM_001172200chr11+24050361240777892405036124077789524050361,24055962,24073514,24075803,24077643,24050749,24056186,24073752,24076058,24077789,
smad9.LNM_001172200chr25+381652638413213816526384132153816526,3823122,3828344,3835408,3841177,3816938,3823289,3828567,3835665,3841321,
map3k13.SNM_001172188chr34+182053461824718718205346182471871618205346,18212977,18217811,18222066,18224034,18224632,18230986,18231872,18231995,18232682,18237985,18238264,18242650,18245957,18 ...18205641,18213162,18218002,18222225,18224193,18224737,18231100,18231984,18231997,18232830,18238117,18238390,18242715,18246072,18 ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.