Schema for estOrientInfo
  Database: canFam4    Primary Table: estOrientInfo    Row Count: 427,486   Data last updated: 2020-05-05
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 1450smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 113419652int(10) unsigned range Start position in chromosome
chromEnd 113427684int(10) unsigned range End position in chromosome
name AB042265varchar(255) values Accession of EST
intronOrientation 3smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        canFam4.all_est.qName (via estOrientInfo.name)
      canFam4.intronEst.qName (via estOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
1450chr1113419652113427684AB04226530000
724chr191822282518231118AB04226410000
820chr363090164830903980AB04226650000
698chr11486718214867746AJ53689900400
698chr11486791714868433AJ536900001200
715chr11711507717115280AJ5368930010031
747chr12124099721241480AJ53737700000
778chr12530746825307783AJ53737900100
798chr12793767027938244AJ5369010230470
856chr13560958935610871AJ536902-302000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.