Schema for mrnaOrientInfo
  Database: cavPor3    Primary Table: mrnaOrientInfo    Row Count: 17,359   Data last updated: 2020-05-05
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chrMvarchar(255) values Reference sequence chromosome or scaffold
chromStart 8324int(10) unsigned range Start position in chromosome
chromEnd 8589int(10) unsigned range End position in chromosome
name AB073371varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        cavPor3.all_mrna.qName (via mrnaOrientInfo.name)
      cavPor3.refFlat.name (via mrnaOrientInfo.name)
      cavPor3.refGene.name (via mrnaOrientInfo.name)
      cavPor3.refSeqAli.qName (via mrnaOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585chrM83248589AB07337100000
696scaffold_01457661914587774AF4942964190400
803scaffold_02868923028698022EU32778660000
833scaffold_03260841232612491EU2640053100330
111scaffold_04073450740775844HQ235018220000
140scaffold_07105724471217643AY28071770000
18scaffold_08281748582848584DQ3244624110012
793scaffold_12739097827393909L0498639000
795scaffold_12758517227586693AF052004330000
795scaffold_12758517227586693U95809330000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.