Schema for xenoRefFlat
  Database: cb1    Primary Table: xenoRefFlat    Row Count: 234,068   Data last updated: 2020-08-20
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName T25B9.6varchar(255) values Name of gene as it appears in genome browser.
name NM_069594varchar(255) values Name of gene
chrom chrUnvarchar(255) values Reference sequence chromosome or scaffold
strand +char(1) values + or - for strand
txStart 87217903int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 87222103int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 87217932int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 87222103int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 8int(10) unsigned range Number of exons
exonStarts 87217903,87218057,87218911,...longblob   Exon start positions (or end positions for minus strand item)
exonEnds 87217995,87218078,87218924,...longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        cb1.xenoRefGene.name (via xenoRefFlat.name)
      cb1.xenoRefSeqAli.qName (via xenoRefFlat.name)
      hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
T25B9.6NM_069594chrUn+87217903872221038721793287222103887217903,87218057,87218911,87219087,87219246,87219273,87219732,87221971,87217995,87218078,87218924,87219159,87219273,87219354,87219807,87222103,
fnip-2NM_001028187chrUn-368596593686556536859659368655651036859659,36860021,36861164,36861338,36861976,36862210,36862334,36863472,36863625,36865535,36859905,36860036,36861215,36861374,36862144,36862285,36862508,36863562,36863730,36865565,
lgc-41NM_001373480chrUn+457145974572288545714597457228851245714597,45714797,45714952,45715213,45715854,45716032,45716143,45716263,45717951,45718138,45718242,45722750,45714750,45714907,45715145,45715369,45715987,45716087,45716211,45716386,45718070,45718199,45718364,45722885,
cpne1NM_001032657chrUn-23107106231072862310710623107283123107106,23107286,
rhcgbNM_001032647chrUn+373747437386513737474373865123737474,3738603,3737534,3738651,
rhcgbNM_001032647chrUn-661550566163116615505661631126615505,6616182,6615565,6616311,
rhbgNM_001032646chrUn+373747437389113737474373891143737474,3737956,3738609,3738866,3737531,3738007,3738651,3738911,
Pde1bNM_008800chrUn-112213411243491122134112434931122134,1123450,1124151,1122368,1123738,1124349,
KBPNM_205353chrUn-31949236319494133194923631949413231949236,31949392,31949374,31949413,
chil-5NM_063726chrUn+37861522378616123786152237861612137861522,37861612,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.