Schema for estOrientInfo
  Database: cb3    Primary Table: estOrientInfo    Row Count: 2,427   Data last updated: 2016-05-27
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 73smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chrIvarchar(255) values Reference sequence chromosome or scaffold
chromStart 393072int(10) unsigned range Start position in chromosome
chromEnd 393328int(10) unsigned range End position in chromosome
name R04897varchar(255) values Accession of EST
intronOrientation 1smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        cb3.all_est.qName (via estOrientInfo.name)
      cb3.est.qName (via estOrientInfo.name)
      cb3.intronEst.qName (via estOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
73chrI393072393328R0489710000
588chrI487323490210R0338120000
588chrI493342493649R0338200000
593chrI10899351090317R05259-10000
593chrI10899401090290R03974-10000
593chrI10903271090731R0385710000
593chrI10903341090697R0504710000
593chrI10903791090724R0368000200
593chrI11699701170242R0332200000
593chrI11754331176596R0332310000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.