Schema for xenoRefFlat
  Database: chlSab2    Primary Table: xenoRefFlat    Row Count: 265,464   Data last updated: 2020-08-18
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName CASP10varchar(255) values Name of gene as it appears in genome browser.
name NM_001306083varchar(255) values Name of gene
chrom chr10varchar(255) values Reference sequence chromosome or scaffold
strand +char(1) values + or - for strand
txStart 86830478int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 86853608int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 86832702int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 86853383int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 7int(10) unsigned range Number of exons
exonStarts 86830478,86832695,86832716,...longblob   Exon start positions (or end positions for minus strand item)
exonEnds 86830643,86832716,86833037,...longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        chlSab2.xenoRefGene.name (via xenoRefFlat.name)
      chlSab2.xenoRefSeqAli.qName (via xenoRefFlat.name)
      hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
CASP10NM_001306083chr10+86830478868536088683270286853383786830478,86832695,86832716,86834646,86839013,86848644,86853323,86830643,86832716,86833037,86834740,86839149,86848754,86853608,
KIAA0319NM_014809chr17+476036594770342047648285477005212247603659,47648180,47652790,47658810,47665255,47666605,47667937,47669014,47670657,47672307,47676313,47678750,47679859,47682019,47 ...47604082,47648340,47653536,47659003,47665354,47666703,47668025,47669107,47670790,47672536,47676437,47678883,47680008,47682171,47 ...
RBM24NM_001143941chr17-54853767548649615485553854864240754853767,54855429,54855625,54855766,54862289,54864122,54864811,54855410,54855587,54855734,54855902,54862344,54864246,54864961,
RPL7ANM_001144039chr13+22366850223677672236688022367712222366850,22367667,22367636,22367767,
Cnbd2NM_001304368chr2+568141525688987256832040568898621056814152,56832040,56838773,56845147,56845828,56848551,56869586,56872110,56882376,56889541,56814206,56832178,56838935,56845306,56845953,56848690,56869673,56872206,56882493,56889872,
cpo.1.LNM_001093836chr10+92744876927561869274487692756186792744876,92746228,92746991,92747410,92747570,92748653,92756054,92744972,92746298,92746996,92747501,92747572,92748854,92756186,
MIR7-1NR_106241chr6+448096544810054481005448100514480965,4481005,
PRRC1NM_001206000chr23+304700813049400630470086304934261130470081,30471143,30473243,30476921,30480127,30485677,30489299,30493216,30493540,30493921,30493979,30470189,30471536,30473401,30477024,30480291,30485781,30489402,30493429,30493590,30493969,30494006,
MFRPNM_001205900chr1-11072051311072534611072052911072534614110720513,110720839,110721567,110721614,110721843,110722784,110723273,110723600,110723850,110724389,110724758,110724842,11072501 ...110720754,110720967,110721605,110721698,110721980,110722928,110723355,110723723,110723979,110724604,110724803,110724896,11072513 ...
gngt2aNM_001302501chr16-69609832696105066960983269610499269609832,69610425,69609955,69610506,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.